Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02466 ATGGCATTTTCATTCACATTTCTGTTCCAGTTCTTGCTTCTTGCCCCATCTGTGATCTATGCTTCTCCAGTTCAAGACCCTGAATTAGTGGTCCAGGAAGTGCAAAAGAGCATCAATGGATCAAGGAGAAACTTGGGGTATCTTTCTTGTGGAACAGGGAACCCCATTGATGATTGTTGGAGGTGTGACCCTAATTGGGAAAGAAACCGCAAGCGTTTAGCTAGTTGTGCAATTGGGTTTGGTAAGCATGCCATAGGTGGAAAAGATGGAAAAATATATGTGGTGACTGACTCTAGTGATAACCCTGTGAACCCGAAGCCAGGAACATTGAGACATGGCGTTATTCAACAAGAGCCATTGTGGATAATTTTCAAGCATGACATGGTGATCAAGCTACACAAGGATCTCTTAGTTAATTCTTACAAAACCATTGATGGAAGAGGAGCAACCATCCACATTGCTGGAGGAGGACCTTGCATTAGAGTGCACAAGAAGACCAATATCATAATCCATGGCATACACATCCATGATTGCAAAAGGGGTGGCAGTGGTTATGTGAGTGACTCTCCTAACCATCGTAGCTGGAGTGCGAGATCGGATGGTGATGGGATCACAATCTTTGGTGGGAGTCATATTTGGGTGGACCATTGCTCCTTGTCAAACTGTTTTGATGGCCTCATTGATGTTGTTCATGGCTCAACGGCCATCACCATTTCCAACAATTACATGATACACCATAACAAGGTCATGCTCTTGGGACACAGTGATTCCTATAAAGCTGACAAGAATATGCAAGTCACCATTGCCTTCAACCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCGAGATGCAGGTTTGGATATTTCCATGTTGTGAACAATGATTACACACATTGGCAACATTATGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAATAGATTTGTTGCTCCAAATGATGATGACCACAAAGAGGTGACCAAACATTTTAAATCATCAAAGAGTGAGTGGAGGAAATGGAATTGGAGGTCTGAAGGAGATGTAATGTTGAATGGTGCCTTCTTCACGCCGTCCGGAGCGGGGGCAACTGCTAGGTATGATAAAGCGTCAAGCATGGCAGCACGACCACCTATGCTTTTGTCTTACATGACAGCTGGGGCTGGAGCGCTTAGATGCAACAAGGGCAATCTATGCCACTAG 1212 0.4455 MAFSFTFLFQFLLLAPSVIYASPVQDPELVVQEVQKSINGSRRNLGYLSCGTGNPIDDCWRCDPNWERNRKRLASCAIGFGKHAIGGKDGKIYVVTDSSDNPVNPKPGTLRHGVIQQEPLWIIFKHDMVIKLHKDLLVNSYKTIDGRGATIHIAGGGPCIRVHKKTNIIIHGIHIHDCKRGGSGYVSDSPNHRSWSARSDGDGITIFGGSHIWVDHCSLSNCFDGLIDVVHGSTAITISNNYMIHHNKVMLLGHSDSYKADKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQHYAIGGSSSPTIFSQGNRFVAPNDDDHKEVTKHFKSSKSEWRKWNWRSEGDVMLNGAFFTPSGAGATARYDKASSMAARPPMLLSYMTAGAGALRCNKGNLCH 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02466 403 SMART amb_all 127 325 IPR002022 -
Gma11g02466 403 Gene3D - 53 395 IPR012334 -
Gma11g02466 403 PANTHER PECTATE LYASE 3 399 - -
Gma11g02466 403 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Gma11g02466 403 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Gma11g02466 403 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Gma11g02466 403 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Gma11g02466 403 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Gma11g02466 403 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Gma11g02466 403 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Gma11g02466 403 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Gma11g02466 403 PANTHER PECTATE LYASE 18-RELATED 3 399 IPR045032 GO:0030570
Gma11g02466 403 Pfam Pectate lyase 138 319 IPR002022 -
Gma11g02466 403 SUPERFAMILY Pectin lyase-like 37 396 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02466 Gma-Chr11 39938276 39940672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02466 3 402 Polysaccharide Lyase AT5G63180 67.160 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02466 K01728 - gmx:100801136 850.892
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00111 18 888001 890297 Gma11g02466 11 39938276 39940672 GST