Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02411 ATGGGAGGCAATTCACCTGAGAGGAAACCTGGTTGTGGCTTGATGACAGCAGTATTTAGACGAAATAATCCATGGTCACGCAAATCAGTCTCTGCAGGTTCTTCTCCTATGGCCCACAATTTTGAAAAACCATCTAACACTCAAGATTCAAAACGGAGACATGGAGGATCTAATGATTTTGTTCCAATTAAAGAATCTTCACATAATAATAACAACAATGATGTTACAAACTACTCTTCTCGTTCTGTCCCCAATCCTCAAAGGCCAACAACACCACATGTTGTAAGCCAAAGGAAACCACAACAAAATCGCGATGAAACAACAATGGGAAAAGGGTCTTCACCTTCACCCACTCAGGGCTATATCAACCAAGGCAAAAGGGTACCAAAAGAAGCTGTTGGAATCTCTGGTGAACTTGAAAGCATGATCAATGAACACCTAAAGTCCAAGGGAAGTAGTACCCTTGGTAATTTAGGTAACCTTAGGCAAGGAGGAGTAGGACCAAAACATCACAATGCTTACAGTGAAATGGATTACTATGCTAGTAATGTTGCTAGTGGAGGACACACAAATCAAATCACAGGACGTGAATATGATAAAACTAGTTTTTATGGCAAGGAAGCTAAACCAAGCAAGGAACAATCAGGTTCACTGTGTAGGGCTGTGTCTACACGAATGGATCCTGAACAATTGAAGATAATGGGCAATGAGGATTACAAGAATGGAAGGTTTGCAGAGGCATTGGCTTTGTATGATGCTGCCATCGCAATTGACCCGAATAAGGCTTCTTATAGGAGCAATAGAAGTGCTGCATTAACTGCTCTTGGAAGGCTTTTGGAGGCTGTTTTTGAATGTAGAGAAGCTATTCGGATTGAGTCTCATTACCAAAGGGCCCATCATCGGTTGGGAAATTTGAACTTAAGATTAGGAGAAACAGACAAAGCTTTATATCATTATAAACAAGCAGGACCAGACGCTGATCCAGATGAGATTGTTAAAGCAAAGACACTCCAAGTATATCTAAACAAATGCACCGAGGCTCGTAGGTTCGGCGATTGGATCACACTTATAACTGCAACCAACAATGCTATATCATCTGGTGCAGACTCTGCTCCACAAATATATGCATTACAAGCCGAAGCCTTGCTAAAGCTTCATAGACATCAAGATGCAGACAAAGTAATGTCAAGGTGCCCTAAATTTGATGTTGATCAGTGTACTAGGTTCTTTGGACCTATTGGTAATGCAAATTTGTTGGTGACACGGGCTCAAGTTGATTTAGTTGCTGGCAGATTTGAAGAAGCTCTGGAGGCAGCACAGAAAGCTACTAGGTTGGATTCTAATAGTAGAGAAGCAAATAAGGTGATGAGAAAGGCTCGAGCTTTGACAAGTGCTCGTGCAAAGGGAAATGAGCTTTTCAAGGCATCAAATTTTCATGAGGCTTGCATTGCCTATGGAGAAGGCCTTGACCATGATCCATATAACTCTGTTTTACTATGCAACAGAGCTGCTTGTAGATCAAAGCTAGGCCAATTTGAGAAAGCAATAGATGATTGCAATACTGCCCTTAACTTacgcccgtcttacatcaaggccaggttgagaagggcagattgtaatgctaagTTGGAAAGATGGGAAGCTTCAATACAAGACTATGAAATTTTACTAAAAGAGACACCGGAAGATGAAGAAGTAAAGCGAGCATTGATGGAGGTCCAAGCACAACTTGAGAAACAGGCAAGGTGA 1749 0.4008 MGGNSPERKPGCGLMTAVFRRNNPWSRKSVSAGSSPMAHNFEKPSNTQDSKRRHGGSNDFVPIKESSHNNNNNDVTNYSSRSVPNPQRPTTPHVVSQRKPQQNRDETTMGKGSSPSPTQGYINQGKRVPKEAVGISGELESMINEHLKSKGSSTLGNLGNLRQGGVGPKHHNAYSEMDYYASNVASGGHTNQITGREYDKTSFYGKEAKPSKEQSGSLCRAVSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPNKASYRSNRSAALTALGRLLEAVFECREAIRIESHYQRAHHRLGNLNLRLGETDKALYHYKQAGPDADPDEIVKAKTLQVYLNKCTEARRFGDWITLITATNNAISSGADSAPQIYALQAEALLKLHRHQDADKVMSRCPKFDVDQCTRFFGPIGNANLLVTRAQVDLVAGRFEEALEAAQKATRLDSNSREANKVMRKARALTSARAKGNELFKASNFHEACIAYGEGLDHDPYNSVLLCNRAACRSKLGQFEKAIDDCNTALNLRPSYIKARLRRADCNAKLERWEASIQDYEILLKETPEDEEVKRALMEVQAQLEKQAR 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02411 582 PANTHER OS01G0616333 PROTEIN 5 581 - -
Gma11g02411 582 MobiDBLite consensus disorder prediction 22 44 - -
Gma11g02411 582 Coils Coil 536 556 - -
Gma11g02411 582 ProSiteProfiles TPR repeat profile. 416 449 IPR019734 GO:0005515
Gma11g02411 582 MobiDBLite consensus disorder prediction 45 59 - -
Gma11g02411 582 SUPERFAMILY TPR-like 228 451 IPR011990 GO:0005515
Gma11g02411 582 Pfam TPR repeat 235 276 - -
Gma11g02411 582 SMART tpr_5 462 495 IPR019734 GO:0005515
Gma11g02411 582 SMART tpr_5 262 295 IPR019734 GO:0005515
Gma11g02411 582 SMART tpr_5 296 330 IPR019734 GO:0005515
Gma11g02411 582 SMART tpr_5 228 261 IPR019734 GO:0005515
Gma11g02411 582 SMART tpr_5 416 449 IPR019734 GO:0005515
Gma11g02411 582 SMART tpr_5 496 529 IPR019734 GO:0005515
Gma11g02411 582 SMART tpr_5 530 563 IPR019734 GO:0005515
Gma11g02411 582 MobiDBLite consensus disorder prediction 1 127 - -
Gma11g02411 582 Gene3D Tetratricopeptide repeat domain 226 582 IPR011990 GO:0005515
Gma11g02411 582 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 581 IPR044534 -
Gma11g02411 582 SUPERFAMILY TPR-like 467 579 IPR011990 GO:0005515
Gma11g02411 582 MobiDBLite consensus disorder prediction 62 123 - -
Gma11g02411 582 ProSiteProfiles TPR repeat profile. 228 261 IPR019734 GO:0005515
Gma11g02411 582 Pfam Tetratricopeptide repeat 498 529 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02411 Gma-Chr11 39487979 39490360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02411 229 303 U-box Gene Family AT3G07370 34.667 7.93e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02411 - - gmx:100811282 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00165 18 1319186 1321628 Gma11g02411 11 39487979 39490360 GST