Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02396 ATGTATAAAGAGGTAGATTATTTATTTCCACGTGATTCTATTCTATCGAAAGCGGTGGCTCAAGCGAACGTGAAGGCTGAGCCTATGAGCTTGCAGGCTGAAGCTGTTGTCGGTGCTCATTATGTAATGAAAATGTCTGTGATTCTCCTCCATCACCGCAAAACCAATCGATTCGCTTCTCAGTCTCTGAAGCTGGCGACTACACTCACTTGGAGGTTTGCTGCCAGTAATGGCAGCACCCTTGCTGCTAATGATATGGAAAGAAATGGTGATGGGAAGGCTCAAGATTCAGAGGCTCTACCTCCTCATTCTGTTCTGAAGATGGGATTGAGAGAACGTAGCAACAGCAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTATGCAAGAGAAAGAGTATTCTTTGAAGCAGTTATTGGAGCTTATTGATATGCGAGAAAACGCTTTCAGTGCTGTTGGCTCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTTTGTAAAGAAAATGAGCTTAGGGTGAAAGTCTTGCTTGGAGGTTGCATTCCTCCTTTGCTTGGTCTACTCAAGTCCAGTTCTGCTGAAGGTCAAGTAGCTGCGGCAAAGACTATTTTTGCTGTCTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTTCCAGTGCTATGGGAGCAGCTGCAAAAGGGCCTGAAGACTGGAAATGTAGTTGATAATTTATTGACTGGGGCATTGAAAAATCTCTCCAGTAGCACTGAGAGATTCTGGAATGCCACAATACAAGCTGGAGGAGTGGACATATTAATTAAGTTACTGACAACAGGGCAGTCTAGCACTTTAGCAAATGTGTGCTTTTTACTGGCTTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGTTGTTGACAGCAGAGGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTCAGGGCTGAGGCAGCCGGTGCTCTTAAAGCTCTATCTGCCCAGTGCAAAGATGCAAGGAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCGTTACAGGAGAATGCTATGTGTGCTTTAGCAAACATTTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCTCCTACTCAAGCTGCCGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCTACCAGGGCATCAGATCCTTTGGTAGTAGAGCAGACATTACTTGAACAATTTAAACCCGGCTTACCATTCCTTGTGCAGGAACGGACCATTGAAGCCCTAGCTAGTTTGTATAGCAATCCTATACTGTCAATTAAACTTACAAATTCTGATGCAAAGCGTTTGCTTGTTGGTTTAATAACAATGGCTGCTAATGAAGTGCAAGATGAGCTTCTAAAATCTCTCTTGACATTGTGCAATACTGAATGCAGTCTATGGCTTGCACTTCAAGGCCGTGAAGGAGTTCAGCTGTTGATATCTCTTCTGGGGCTTTCATCAGAACAGCAGCAAGAATGTGCTGTTTCCCTCCTTTGCCTTTTATCTAATGAAAATGATGAAAGCAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCAGCAACAATCCTTAGGAACCTATGCGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCCGTTCCTGCATTGCTGTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCCAAGACTTTGAATCACTTAATTCATAAATCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACCAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCAGTTGTTGCTCTTACTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATTGTTACAATGATAAAACTTTTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGCATCTGCTCTGGCGGGAATTTTCGAAACGAGGAAAGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGCAATGAAGTTGCTTAATGTTGAATCTGAAAGTATCTTAATGGAGTCCTCGCGCTGCTTGGCTGCAATATTTCTTTCCATCAAAGAGAACAAGGATGTGGCTGCTATTGCTAGAGATGCATTACTCTCCCTAGTTGCACTAGCTAACTCTTCAGTTTTAGAAGTGGCAGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAATTGCTGAGAAAGCTGTTGCAGAAGAGGTCATCTTGGCTGCTACCAGAGTATTACGTGAAGGCACAATTTCTGGAAAAACACATGCTGCTGCAGCAATTGCTCGCCTCTTACATTGTAAGAGGCAAGTTGATTATGCTGTAACTGATTGTGTGAATCGAGCTGGCACTGTTCTTGCATTAGTTTCTTTCTTAGATTTTGCTATTGATGGACATAGTTCCACATCAGAAGCTCTTGAAGCACTTGCCATGCTGTCCAGGTCAGATGTGACCGGTGCACACAGTAAACCTGCTTGGGCAGTTTTAGCTGAATTTCCTAAAAGCATAAGCCCGATAGTTTTGTCTATTGCTGATTCAACGTCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTTTTGTTCTGGGAGACAGTGTTGTTACTGCCTCTGGATGTATATCTTCTATAGCTAAGAGGATAATCAATTCCACTTCTAAAAATGTAAAGGTCAAAATTGGAGGGGCTGCTGTTCTTATTTGTGCTGCTAAACTAAATCATCAGAGGCTGGTGGAGGATCTCAATAGATCAAACTTGTGTGCTAATCTTGTTCAGTCTCTGGTCGATATGCTTATTTCTTCACAGGCTACTTTGGATAATCAGGGTGATGACAGCAGGGAAGTTATCAGCATTTGCAGGCATACAAAAGAAGCCAATGATGGTAAATCAAACACTGGTACCGCTATTATTTCTGGTGCCAACTTAGCTGTATGGTTACTGTCTGTTCTTGCTTGCCATGATGAAAAAAGTAAAATTGCAATAATGGAGGCAGGAGCAATTGAGGTTCTCACTGACAGGATTGCAGATTGTTTCTCACAATATAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACCATGAAATCTATACCAGCCCTTGCCAACTTATTGAAGTCAGAGGAATCAGCGAACAGATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATTCTGATATACAGGATCTTCTGGAATTGTCAGATGAATTTTCTTTGGTGCATTATCCTGACCAAGTTGCTCTCGAGAGGTTGTTTAGAGTTGATGACATAAGAATTGGTGCCACTTCTCGGAAGGCAATACCTGCTTTAGTTGATCTGCTCAAACCAATTCCAGAACGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTTCTATAGATTGTCCATCAAATAAGATTGTAATGGTTGAGGCAGGGGCCCTAGAGGCTCTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACGGAAGAAGCTGCTACAGATCTGTTAGGAATTCTGTTTAGCAGTGCAGAAATTCGAAGACATGAGTCAGCAGTTGGAGCTGTTACTCAACTTGTAGCTGTCCTGCGTTTAGGAGGAAGAGCTGCAAGATATAGGGCTGCAAAAGCTTTGGAAAGTTTATTCTCTGCTGACCATATTAGAAATGCAGAGACTGCTCGACAAGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGTTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCATTGGTTAGGTTACTGAGTGAAAACCCTTCAAAAGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTGGATGTTCTTTGCAGGATTCTCTCATCAGATTGCTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACCAGGATTCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCTCTGGTCTCTCTCCTTGTAAGTGAGTTTAGTCCTGCTCACCATTCAGTTGTCCGTGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTTTATGGTAGGAATTATGTACTTCACGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCAGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTGTGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAACAATGCTAGCATAGCTAAAGGGCCATCGGCTGCTAAAGTAGTTGAACCCCTGTTTATGTTGCTGACAAGAGAAGAATTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTAGTTAATATCTTAGAACATCCGCAGTGTCGTGCTGATTACTCATTGACTTCTCACCAAGTTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCGCATCTACTTTTAGAAGAACACCTTCAGAAAGATCCGGTGACGCAACAGGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAGCAAAGAGCTATAAAGGCCCTGGTTAGTATTGCACTGATATGGCCAAATGAAATTGCAAAAGAAGGTGGTGTTATTGAAATTTCAAAAGTTATATTGCAATCTGATCCTTCCATTCCTCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCTAGTATTCTACAATTTAGTTCTGAATACTACTTGGAAGTTCCTGTTGCTGTTTTGGTTAGGCTGCTTCGATCTGGCTTAGAAAGCACTGTTGTTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGGAACTAGTGCTGAAGCAATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTGGGATCTCATCAGTGCGAGGAAACTGCTGCAAGACTGTTGGAAGTTTTGCTCCACAATGTAAAGATCAGAGAAACAAAAGTTACTAAGTCAGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGTTGTTAGCAACTTTGGCTCTTGGTGATCTATTTCAGAATGAGGGTCTTGCTCGGACAAGTGATGCAGTTTCAGCTTGTCGCGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCGGGTGGGGTTCAGGTTATACTGGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGATCTGTGAACGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAACTTCCCAAGACTGAGAGCAACTGAACCAGCAACACTTAGCATTCCCCATTTGGTTACGTCCTTAAAGACAGGCTCTGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGTCCAGCAGAAGTTTCAAGAGCTCAGTCAATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGGCCCACCTCGCTTTCAGGAGAAGGCAGAATTTTTATTGCAGTGTTTGCCAGGAACGTTGGTGGTGATCATCAAGTGTGGTAACAATATGAAGCAATCTGTTGGAAACCCAAGTGTTTTTTGCAAGCTTACACTAGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCTAATCCGGAGTGGGATGAGAGCTTTACATGGTCGTTTGAGAGTCCTCCAAAAGGTCAGAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACGATCCAGATTGATCGGGTAGTAATGCTTGGAGCAGTATCTGGTGAGTACACTCTGTTGCCGGAAAGTAAAAGTGGACCCTCGAGGAATTTAGAAATTGAATTTCAGTGGTCTAACAAGTGA 6660 0.4305 MYKEVDYLFPRDSILSKAVAQANVKAEPMSLQAEAVVGAHYVMKMSVILLHHRKTNRFASQSLKLATTLTWRFAASNGSTLAANDMERNGDGKAQDSEALPPHSVLKMGLRERSNSSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTGNVVDNLLTGALKNLSSSTERFWNATIQAGGVDILIKLLTTGQSSTLANVCFLLACMMMEDASVCSKLLTAEATKQLLKLLGPGNDAPVRAEAAGALKALSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQAADTLGALASALMIYDDKAESTRASDPLVVEQTLLEQFKPGLPFLVQERTIEALASLYSNPILSIKLTNSDAKRLLVGLITMAANEVQDELLKSLLTLCNTECSLWLALQGREGVQLLISLLGLSSEQQQECAVSLLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALTDLLREGSAASDAIVTMIKLLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENKDVAAIARDALLSLVALANSSVLEVAELATCAVANLILDSEIAEKAVAEEVILAATRVLREGTISGKTHAAAAIARLLHCKRQVDYAVTDCVNRAGTVLALVSFLDFAIDGHSSTSEALEALAMLSRSDVTGAHSKPAWAVLAEFPKSISPIVLSIADSTSVLQDKAIEILSRLCKDQPFVLGDSVVTASGCISSIAKRIINSTSKNVKVKIGGAAVLICAAKLNHQRLVEDLNRSNLCANLVQSLVDMLISSQATLDNQGDDSREVISICRHTKEANDGKSNTGTAIISGANLAVWLLSVLACHDEKSKIAIMEAGAIEVLTDRIADCFSQYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADSDIQDLLELSDEFSLVHYPDQVALERLFRVDDIRIGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLSIDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAVGAVTQLVAVLRLGGRAARYRAAKALESLFSADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFMLLTREEFGPDGQHSALQVLVNILEHPQCRADYSLTSHQVIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQQVIGPLIRVLGSGIHILQQRAIKALVSIALIWPNEIAKEGGVIEISKVILQSDPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLGSHQCEETAARLLEVLLHNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARTSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVILDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGSVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKCGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWDESFTWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02396 2219 SUPERFAMILY ARM repeat 1253 1636 IPR016024 -
Gma11g02396 2219 SUPERFAMILY ARM repeat 956 1221 IPR016024 -
Gma11g02396 2219 Gene3D C2 domain 2097 2219 IPR035892 -
Gma11g02396 2219 Pfam C2 domain 2098 2194 IPR000008 -
Gma11g02396 2219 CDD C2 2100 2190 - -
Gma11g02396 2219 SUPERFAMILY ARM repeat 1648 2096 IPR016024 -
Gma11g02396 2219 Gene3D - 885 1235 IPR011989 -
Gma11g02396 2219 SMART arm_5 377 426 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 202 242 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 1297 1338 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 1798 1837 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 1925 1965 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 1549 1589 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 1507 1547 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 334 375 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 1379 1420 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 1466 1506 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 633 673 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 547 589 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 1252 1295 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 591 631 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 1634 1675 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 160 201 IPR000225 GO:0005515
Gma11g02396 2219 SMART arm_5 799 837 IPR000225 GO:0005515
Gma11g02396 2219 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2098 2207 IPR035892 -
Gma11g02396 2219 Gene3D - 111 475 IPR011989 -
Gma11g02396 2219 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 602 644 IPR000225 GO:0005515
Gma11g02396 2219 SMART C2_3c 2099 2195 IPR000008 -
Gma11g02396 2219 ProSiteProfiles C2 domain profile. 2079 2196 IPR000008 -
Gma11g02396 2219 SUPERFAMILY ARM repeat 680 1049 IPR016024 -
Gma11g02396 2219 Gene3D - 1460 1767 IPR011989 -
Gma11g02396 2219 SUPERFAMILY ARM repeat 131 333 IPR016024 -
Gma11g02396 2219 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 83 2219 - -
Gma11g02396 2219 Coils Coil 363 383 - -
Gma11g02396 2219 Gene3D - 680 884 IPR011989 -
Gma11g02396 2219 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1264 1308 IPR000225 GO:0005515
Gma11g02396 2219 SUPERFAMILY ARM repeat 284 674 IPR016024 -
Gma11g02396 2219 Gene3D - 1888 2094 IPR011989 -
Gma11g02396 2219 Gene3D - 1768 1887 IPR011989 -
Gma11g02396 2219 MobiDBLite consensus disorder prediction 82 103 - -
Gma11g02396 2219 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 83 2219 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Gma11g02396 2219 Gene3D - 482 679 IPR011989 -
Gma11g02396 2219 Pfam Armadillo/beta-catenin-like repeat 591 631 IPR000225 GO:0005515
Gma11g02396 2219 Pfam Armadillo/beta-catenin-like repeat 170 200 IPR000225 GO:0005515
Gma11g02396 2219 Gene3D - 1246 1459 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02396 Gma-Chr11 39335823 39345963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02396 564 686 U-box Gene Family AT2G23140 41.935 3.49e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02396 - - gmx:100816765 4009.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00179 18 1466211 1480318 Gma11g02396 11 39335823 39345963 GST
Gma05g01794 05 39543711 39554422 Gma11g02396 11 39335823 39345963 PCT
Gma08g01285 08 10895072 10905453 Gma11g02396 11 39335823 39345963 PCT