Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02386 ATGAAACCTCTCTCCAAGCTCTTGAACAAGTTTTGTGGGAAAATGATAATGCTATTAGCATCCCTGCTAATAGAACTCATAATTCTCATTCAAAAACTAAGGGAATCACGTCCAATCAGCACCCGCCAATACCTCAAACTCATCGAGAAGAAGAACCCCACCATTTGCTACACCAAAAGATTGAACTTGAAGGCAGAGCACGCTGCTACAGCTACTGAGTGTAGGGTATGTCTGTCCGAATTCGAGGAAGGGGAGAAGGTGAGGAAACTGAAATGCCAACACACCTTTCATAGGGATTGTTTGGACAAGTGGTTGCAACAGTATTGGGCAACGTGCCCACTTTGTCGGAAACAGGTGCTGCCAGATGATGTTGTGTTCAAGCACCGTCTGCATCAGAATCAAGCAGAGGCTGCTTCTAATAATGGGAATGATGACAATCTTCTCTATCTTTTTTCAGCATTTCGTGGTGGCAACACTTAA 480 0.4417 MKPLSKLLNKFCGKMIMLLASLLIELIILIQKLRESRPISTRQYLKLIEKKNPTICYTKRLNLKAEHAATATECRVCLSEFEEGEKVRKLKCQHTFHRDCLDKWLQQYWATCPLCRKQVLPDDVVFKHRLHQNQAEAASNNGNDDNLLYLFSAFRGGNT 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02386 159 SUPERFAMILY RING/U-box 56 122 - -
Gma11g02386 159 SMART ring_2 74 115 IPR001841 -
Gma11g02386 159 PANTHER - 1 159 - -
Gma11g02386 159 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Gma11g02386 159 CDD mRING-H2-C3H2C2D_ZSWM2 73 116 - -
Gma11g02386 159 Pfam Ring finger domain 73 116 IPR001841 -
Gma11g02386 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 121 IPR013083 -
Gma11g02386 159 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02386 Gma-Chr11 39239307 39240304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02386 72 127 C3H Transcription Factor Family AT1G15100 55.357 6.63e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02386 K16282 - gmx:102661897 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00189 18 1525004 1526040 Gma11g02386 11 39239307 39240304 GST
Gma05g01798 05 39590230 39590706 Gma11g02386 11 39239307 39240304 PCT
Gma08g01289 08 10936180 10936650 Gma11g02386 11 39239307 39240304 PCT