Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02384 ATGGCCGATCACTCAGATTCTTCTCCTCTCGTTCCTCCCCTTCCCCTCACCGACCCTTCTGAGATCGACCTCGAAGCTGGTCCCTCCGAACAAATCCAGTGCCGAATTTGTCTCGAAACTGACGGTAGAGATTTCATAGCCCCTTGTAAGTGCAAAGGTACATCAAAATATGTGCATCGAGAATGTTTGGATCATTGGCGAGCAATTAAGGAAGGGTTTGCCTTTGCTCACTGCACTACATGCAAGGCTCCTTATCATTTGCGTGTCCATGTTGCTGCTGATAGGAAATGGCGTACCCTGAAATTTCGATTTTTTGTCACCAGAGACATGTTGTTTATTTTTCTGTCTGTCCAGCTTGTCATTGCTTCACTGTCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTCTGGGGTTTTGATAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTGTTTTTTGCCTTGCTTGGCCTCTCTGGGTGCTTCATTACCTGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAGCCTTGTAGAGAATTATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGTTGTTTGGGGGGTGCTGGGGAAGCTGGGCTACCACTATTATTCATTATGGCTTTGATTGTTCTGGGACTTTTTACTGTAATTGGGATATTCTACAGTGTATTGGTTGCTACCATGGTAGGTCAACGGATATGGCAACGTCATTATCACATACTTGCAAAAAGGATGTTAACAAAGGAGTATGTGGTTGAAGACGCTGATGGAGAGCTGACTGGATCGGATTGGTCTCCCCCGGCTCTCCCACCCGAACATGTTCAGCAGTTGAAAACATTGGGCCTACTATGA 972 0.4496 MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDMLFIFLSVQLVIASLSYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDADGELTGSDWSPPALPPEHVQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02384 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Gma11g02384 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Gma11g02384 323 SUPERFAMILY RING/U-box 29 86 - -
Gma11g02384 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Gma11g02384 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Gma11g02384 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Gma11g02384 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
Gma11g02384 323 SMART ringv_2 33 82 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02384 Gma-Chr11 39224050 39230948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02384 1 323 C3H Transcription Factor Family AT2G22120 85.185 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02384 - - gmx:100820355 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00191 18 1538356 1543628 Gma11g02384 11 39224050 39230948 GST
Gma05g01800 05 39602363 39606644 Gma11g02384 11 39224050 39230948 PCT