Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02350 ATGGATTCCGAGTTCCCCAACAAAGCGTTAACAAGCGTGCGTTTTTCCGACCTGAATCCGCCACTCTCTGAACCGGTTCTCCAAGCCCTATCACACTCCGGCTTCGACTTCTGCACCCCCGTCCAAGCCGCCACCATTCCCTTGCTCTGCAGTTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCCGGCAAAACCCTAGCTTTTGTCATTCCTCTCGTCGAGATTCTACGTCGCTCCTCTTCTCATCCCAAGCCTCACAAGGTGCTAGGAATAATTATATCCCCTACAAGGGAGCTATCAACTCAAATATATCATGTTGCACAGTCCTTCATTTCAACATTGATGAATGTTAAGTCCATGCTCCTCGTTGGTGGAGCAGAAGTAAAAACAGACATAAAGAAAATAGAGGAGGAAGGAGCAAACATATTGATTGGCACGCCCGGACGGCTATATGACATAATGAATCGGATGGATGTTTTGGATCTTAAAAACCTTGAGATTTTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTCCAGAAGCAGATAACTTCTATTATATCTCTCTTGCCTAAGCTTCGGAGAACTGGTCTGTTCTCTGCTACTCAAACTGAGGCTATTGAAGAGCTTGCTAAGGCAGGATTGAGGAACCCTGTGAGGGTTGAAGTTCGAGCAGAAACAAAATCAGAAAAGGGTCCCGCATCATCAAAACAACCAGAATCTTCCAAAACACCTTCAGGACTTCACATTGAGTACTTGGAATGCGAGGAAGATAAGAAGCCATCACAGCTACTAGATATCCTTATTAAGAATCGCTCAAAAAAAATTATAATATATTTCATGACTTGTGCATGCGTTGATTATTGGGGAGCTGTCCTTCCTTGTCTTTCTGTTTTGAAAGGCTTCTCCTTGATTCCCCTACATGGGAAGATGAAGCAGTCTGCCAGGGAGAAAGCACTAGCTTCATTTACAACCCTTTCAAATGGAATTCTTCTATGTACAGATGTTGCTGCACGTGGACTTGACATACCGGGTGTAGATTGTATAGTGCAGTATGATCCTCCTCAAGATCCAAACGTTTTCATACATAGAGTAGGTCGAACTGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCCTGCGTATAAGAAGAGTTCCCCTTCAAGAGAGAATATGTTCTGATGATGCTACCGATGTTGTTCCTCAGATTCGTTCTGCCGCAAAAAAAGATCGTGATGTCATGGAAAAGGGAATTAAGGCTTTTGTTTCTTACATCCGTGCTTATAAAGAGCATCACTGTTCCTATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAATTGGCTACGGGATTTGGCTTATTACAACTTCCTTCAATGCCGGAGGTAAAGCACCACTCACTTTCCACGGATGGATTTGAGCCAGTTGAAGATATCAATTTGGTGGACATTAAGTACAGGGATAAATCACGGGAGAAACAAAGGAAGAAGAACCTGCAAGCAAAGAAAGAAGCCAAAGAGAGAGAGCCAAAACCTCAAAAACCGAAGAAAACCCCAATTGCACCCACTGCCACGCGGAAGAAAACAGCCCGACAGAGACGTGCTCAGCAGACAATGGAAGACGAGGAAGAGTTGATGCAGGAATACCGCTTATTGAAGAAATTGAAGAAAGGGACCATAGATGAGAACGAATATGCCAAGTTGACAGTTTTTGCATGGCGAAAGGTGCGCAAGGCGATGAGATCATTTTCCCTCAAGCACTGTTGGTCGCAGAAAATGAACCACCCTCAGATTGTTATACATGGAAAGTGGTGCAGTGCAAAGAGTTGTGGAAAGTCCCACAGTTTTGCCAgatcatgtgcctag 1908 0.4376 MDSEFPNKALTSVRFSDLNPPLSEPVLQALSHSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRSSSHPKPHKVLGIIISPTRELSTQIYHVAQSFISTLMNVKSMLLVGGAEVKTDIKKIEEEGANILIGTPGRLYDIMNRMDVLDLKNLEILILDEADRLLDMGFQKQITSIISLLPKLRRTGLFSATQTEAIEELAKAGLRNPVRVEVRAETKSEKGPASSKQPESSKTPSGLHIEYLECEEDKKPSQLLDILIKNRSKKIIIYFMTCACVDYWGAVLPCLSVLKGFSLIPLHGKMKQSAREKALASFTTLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERICSDDATDVVPQIRSAAKKDRDVMEKGIKAFVSYIRAYKEHHCSYIFRWKELEIGKLATGFGLLQLPSMPEVKHHSLSTDGFEPVEDINLVDIKYRDKSREKQRKKNLQAKKEAKEREPKPQKPKKTPIAPTATRKKTARQRRAQQTMEDEEELMQEYRLLKKLKKGTIDENEYAKLTVFAWRKVRKAMRSFSLKHCWSQKMNHPQIVIHGKWCSAKSCGKSHSFARSCA 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02350 635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Gma11g02350 635 SMART DUF4217_3 413 476 IPR025313 -
Gma11g02350 635 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Gma11g02350 635 MobiDBLite consensus disorder prediction 227 249 - -
Gma11g02350 635 MobiDBLite consensus disorder prediction 504 529 - -
Gma11g02350 635 MobiDBLite consensus disorder prediction 504 556 - -
Gma11g02350 635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Gma11g02350 635 CDD SF2_C_DEAD 254 384 - -
Gma11g02350 635 Coils Coil 546 569 - -
Gma11g02350 635 SMART helicmild6 293 375 IPR001650 -
Gma11g02350 635 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Gma11g02350 635 CDD DEADc_DDX55 26 224 - -
Gma11g02350 635 PANTHER RNA HELICASE 25 584 - -
Gma11g02350 635 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Gma11g02350 635 Gene3D - 253 487 IPR027417 -
Gma11g02350 635 Gene3D - 3 227 IPR027417 -
Gma11g02350 635 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 584 - -
Gma11g02350 635 SMART ultradead3 34 254 IPR014001 -
Gma11g02350 635 Pfam Domain of unknown function (DUF4217) 416 474 IPR025313 -
Gma11g02350 635 Coils Coil 503 523 - -
Gma11g02350 635 Pfam DEAD/DEAH box helicase 39 212 IPR011545 GO:0003676|GO:0005524
Gma11g02350 635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02350 Gma-Chr11 38909793 38917132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02350 22 389 Eukaryotic Initiation Factors Gene Family AT3G13920 29.268 1.31e-44 162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g02350 11 38909793 38917132 Gma11g02350 11 38909793 38917132 ECH
Gma18g00226 18 1814725 1819350 Gma11g02350 11 38909793 38917132 GST