Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02335 ATGATGGGAGATAAAAGGCTCAGAAATCATGGAAGAAACTTTAGAATGGTTTCCATTGTGACTATGGAAAATTACTATGATTCTGGCTGGCACATGGGCACCAGCAACTGGGCTCAATGCAGTGATCATTCTTCTTCTTCTTCCTTTGCAGTGCCTACACAACAAATACTCCCTCATCATGTCACTGACGCTGCCTCTCTTCAATTTGGTGAGTTTCACTCATGGTCACTTCCCATTGAAGGGGCTGCAGAAGAGAGAGCAATAAGTGCTTCCAAGAGTCACAGGCAAGCTGAGAAAAGGCGCAGAGACAGGATCAATGCACAGCTTGCAACTCTTAGAAAACTTATTCCCAAGTCTGATAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGACCAAGTGAAAGATCTAAAGCGAAAAGCCATGGATGTTAGCAGAGCCTTCACAGTTCCAACTGAAATCGATGAAGTATCAATTCATCATGACCATGTTCTTCAAGATGAAAGCTGCACTGAAAAAGTGAACAAATTGAAGGACAATATTGTGATCAAGGCTTCTGTTTGCTGCGATGATCGACCAGAACTTTTCCCTGAACTCATCCAAGTCCTCAAAGGCTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTGCTTTGTTCTAAGGATAGTGAAAGTGTTTGCCTTGCCACTCTCAAACAGTCCCTCAAATCTGCTATCACCAAAATTGCTTCATCATCATCCATGGCTTCTAGTTGTCCCTCTAGAAGTAAGAGGCAGAGATTCTTCTTGCCTTCTCACTGCCTACAGTAA 843 0.433 MMGDKRLRNHGRNFRMVSIVTMENYYDSGWHMGTSNWAQCSDHSSSSSFAVPTQQILPHHVTDAASLQFGEFHSWSLPIEGAAEERAISASKSHRQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDQVKDLKRKAMDVSRAFTVPTEIDEVSIHHDHVLQDESCTEKVNKLKDNIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSESVCLATLKQSLKSAITKIASSSSMASSCPSRSKRQRFFLPSHCLQ 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02335 280 CDD bHLH_AtAIG1_like 84 163 - -
Gma11g02335 280 Coils Coil 95 115 - -
Gma11g02335 280 Gene3D - 83 147 IPR036638 GO:0046983
Gma11g02335 280 PANTHER TRANSCRIPTION FACTOR BHLH51 46 278 - -
Gma11g02335 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 138 IPR011598 GO:0046983
Gma11g02335 280 SMART finulus 95 144 IPR011598 GO:0046983
Gma11g02335 280 Pfam Helix-loop-helix DNA-binding domain 92 138 IPR011598 GO:0046983
Gma11g02335 280 PANTHER TRANSCRIPTION FACTOR BHLH30 46 278 IPR045847 GO:0003700|GO:0006355
Gma11g02335 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 141 IPR036638 GO:0046983
Gma11g02335 280 CDD ACT_UUR-ACR-like 187 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02335 Gma-Chr11 38773231 38774901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02335 85 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 50.746 1.80e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma11g02335 HLH 4.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02335 - - gmx:100305722 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g02335 11 38773231 38774901 Gma11g02335 11 38773231 38774901 ECH
Gma18g00240 18 1948226 1949532 Gma11g02335 11 38773231 38774901 GST
Gma11g02335 11 38773231 38774901 Gma14g00493 14 4652794 4654377 PCT
Gma11g02335 11 38773231 38774901 Gma02g02434 02 50471393 50473066 PCT
Gma14g00493 14 4652794 4654377 Gma11g02335 11 38773231 38774901 PCT
Gma02g02434 02 50471393 50473066 Gma11g02335 11 38773231 38774901 PCT