Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02328 ATGATTGATATCACAGTTGACGCACCAAGTTTTGTTTCAAAAGTGGACAGTGCCATAAGGAGTGAGAGTGAGACTTGGTCAAATTTGGGAGCATCCCGCCTCCATAGTTTTGCTTCTGTAGTGGACTGGGCTATAAGGAGTAGCAGGACTGTGTCGAATTTGGGAACATCACCTGTCCCTAGTTTTGCTTCGGCAGAGGACAATAATGTGATGAGGGCTGTTCCTGCACGATTATTCACCTGGGCTGAGCTTGTAGCAGCCACCAACAATTTCTCAATTCACAACCAGATTGGTGCTGGCTGTTTCAGTGTTGTGTACAGAGGTAAACTTGTCGATGGTCGAGAGGTTGCAATCAAGACGGGTGGAACCTGGCCAAAGAGAGAGAGCAAATTGACCTTGTTATCCGGTTTACACCACAAGAACTTGATTGGGCTGGTTGGATTCTGTGAAACGAATTATGAAAGACTCAGTGTGTATGAGTACATGAAGAATGGGTCCTTGTATGATCGTTTGCATGACAAGGGTAGCAGTGTCTTGAATTCGTGGAAAATGAGGATCAAAATTGCTTTGGATGCCTCTCGAGGAATAGAATATCTTCATAATTATGCAGATTCCTTTATTATTCACGGAGATATCAAGTCTTCCAACATTCTTCTTGATGCCACCTGGACGGCAAGAGTATCTGATTTTGGATGGAAGTTTATGAGAAACAGACGACGAATAATTGAGAACACTGATCCTGAGTACGTTATTCGAGGTGCATTGTCAGCAGAGAGTGATGTGCATGGGCTTGGAGTTGTACTGTTTGAACTTCTAACAGGAAAGAGACCTACATTCGTGTACGGGGAAGATGGAGGCACCCTATTAAGTAGAAAGCATTTGGTAGACTTTGCTGTGACTGCTATTTCAAATGGATTTTTGGAGAAAATTTTGGATCAAAGGGCTGGACAACCCGATGTGAATGAAGCAGAAGCAGTAAAGTTAGTGGCTGATACCGCTATCCGTTGTGTGAATTTGAAACTGAAAGATAGACCAACCATGGCTGACATTGTAGTCAGATTAGAGCGGGCTTTGGCTATTTGTGAATATGATAGCATTTTCAGGGGTACCATCTATGATGTTTCAGAATGA 1131 0.4315 MIDITVDAPSFVSKVDSAIRSESETWSNLGASRLHSFASVVDWAIRSSRTVSNLGTSPVPSFASAEDNNVMRAVPARLFTWAELVAATNNFSIHNQIGAGCFSVVYRGKLVDGREVAIKTGGTWPKRESKLTLLSGLHHKNLIGLVGFCETNYERLSVYEYMKNGSLYDRLHDKGSSVLNSWKMRIKIALDASRGIEYLHNYADSFIIHGDIKSSNILLDATWTARVSDFGWKFMRNRRRIIENTDPEYVIRGALSAESDVHGLGVVLFELLTGKRPTFVYGEDGGTLLSRKHLVDFAVTAISNGFLEKILDQRAGQPDVNEAEAVKLVADTAIRCVNLKLKDRPTMADIVVRLERALAICEYDSIFRGTIYDVSE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02328 376 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 20 365 IPR044815 GO:0004674
Gma11g02328 376 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 20 365 - -
Gma11g02328 376 SMART serkin_6 91 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02328 376 Gene3D Transferase(Phosphotransferase) domain 1 162 365 - -
Gma11g02328 376 SUPERFAMILY Protein kinase-like (PK-like) 72 354 IPR011009 -
Gma11g02328 376 ProSiteProfiles Protein kinase domain profile. 91 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02328 376 Pfam Protein tyrosine and serine/threonine kinase 92 354 IPR001245 GO:0004672|GO:0006468
Gma11g02328 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gma11g02328 376 ProSitePatterns Protein kinases ATP-binding region signature. 97 119 IPR017441 GO:0005524
Gma11g02328 376 Gene3D Phosphorylase Kinase; domain 1 60 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02328 Gma-Chr11 38658855 38659985 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02328 76 376 Receptor kinase-like Gene Family AT3G55950 51.929 1.61e-88 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma11g02328 PK_Tyr_Ser-Thr 7.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02328 - - gmx:100805031 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00248 18 2049389 2050411 Gma11g02328 11 38658855 38659985 ECH
Gma11g02328 11 38658855 38659985 Gma11g02328 11 38658855 38659985 ECH
Gma18g00248 18 2049389 2050411 Gma11g02328 11 38658855 38659985 GST
Gma11g02328 11 38658855 38659985 Gma14g00502 14 4795641 4798031 PCT
Gma11g02328 11 38658855 38659985 Gma02g02425 02 50337466 50340131 PCT
Gma14g00502 14 4795641 4798031 Gma11g02328 11 38658855 38659985 PCT
Gma02g02425 02 50337466 50340131 Gma11g02328 11 38658855 38659985 PCT