Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02292 ATGGAATTCGAGACTTCATATCCAACTTGTTTTATGTCAAATTCAAGTTGGTTTTCTCAAGAAGGCCAATTCACAGAATGGACAAGAGAAGAGAATAAGAAATTTGAAAGTGCCCTTGCCATATATGATAAGGATACCCCAGACAGATGGCTGAGGGTTGCAGCCATGCTCCCTGGAAAAACTGTCTATGATGTGATCAAACAATACAGAGAATTGGAAGAAGATGTTTGTGAAATAGAAGCAGGGAGGATTCCAGTTCCTGGATATCCTACCTCTTCTTTAACATTGGAGATGGTTGACAACCAATGTTATGATGCATGCAGAAAGAAGCCTGCAACTCTCAGGAGTTCTGATCAGGAGAGGAAGAAAGGGGTTCCTTGGACAGAAGAGGAACATAGACGTtttcttatgggacttttaaagtatggtaagggggattggagaaatatctctcgcaattttgttgtgacaaaaactcccacccaagtggcaagtcatgctcaaaagtattatataaggcaaaagctttctggagggaaagacaataaaaggaggcctagtatccatgatatcaccATTGTTAATCTTACATCAGATCAAGAGAAGCCTCTTTTATTCAATGATGAGTCTCACATGACTTCTGAGCAACAGAAGCTAACTAGCATGCCAAAAGTACAACTTGAATGGCGGATTAATCACCACAACAATGGCGGGTCAAATTATGATATGTTCGTGTCACCTAATTCATCTGGCATCTCTTCCAAGACCCTCAAGTTGCAAGGGCAGGATTTCTATGAATGTGCTTTTCATGAGACTTATGCCAAGCTTAAAAATACGGGTTTCAGGACAGCTTCTAGAGACTTCAACAAGGAAGCTATTTTTGGTATTCATGCACTGTAA 900 0.3278 MEFETSYPTCFMSNSSWFSQEGQFTEWTREENKKFESALAIYDKDTPDRWLRVAAMLPGKTVYDVIKQYRELEEDVCEIEAGRIPVPGYPTSSLTLEMVDNQCYDACRKKPATLRSSDQERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGKDNKRRPSIHDITIVNLTSDQEKPLLFNDESHMTSEQQKLTSMPKVQLEWRINHHNNGGSNYDMFVSPNSSGISSKTLKLQGQDFYECAFHETYAKLKNTGFRTASRDFNKEAIFGIHAL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02292 299 Gene3D - 18 86 - -
Gma11g02292 299 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Gma11g02292 299 SMART sant 23 75 IPR001005 -
Gma11g02292 299 SMART sant 123 173 IPR001005 -
Gma11g02292 299 CDD SANT 126 170 IPR001005 -
Gma11g02292 299 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Gma11g02292 299 SUPERFAMILY Homeodomain-like 26 79 IPR009057 -
Gma11g02292 299 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Gma11g02292 299 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Gma11g02292 299 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 281 - -
Gma11g02292 299 Gene3D - 125 176 - -
Gma11g02292 299 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Gma11g02292 299 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 281 IPR043363 -
Gma11g02292 299 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Gma11g02292 299 CDD SANT 26 72 IPR001005 -
Gma11g02292 299 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02292 Gma-Chr11 38282740 38285188 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma11g02292 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02292 - - gmx:100783469 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00282 18 2354988 2357044 Gma11g02292 11 38282740 38285188 ECH
Gma03g00701 03 22248348 22251015 Gma11g02292 11 38282740 38285188 ECH
Gma01g01127 01 39907973 39909727 Gma11g02292 11 38282740 38285188 ECH
Gma18g01813 18 50365264 50368004 Gma11g02292 11 38282740 38285188 ECH
Gma07g01344 07 17814718 17816114 Gma11g02292 11 38282740 38285188 ECH
Gma18g00613 18 6014645 6017075 Gma11g02292 11 38282740 38285188 ECH
Gma11g02292 11 38282740 38285188 Gma11g02292 11 38282740 38285188 ECH
Gma18g00282 18 2354988 2357044 Gma11g02292 11 38282740 38285188 GST