Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02284 ATGTCTTTTATCGGTACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACGGTTTATCCAGTTGATCAGCTTTCTGCTGATGGCACTGCTTATCACAAAGCTTGCTTCAGATGTTCTCACTGCAAAGGAACATTAAAGCTGAGCAACTATTCCTCAATGGAAGGTGTTCTTTATTGTAAGCCTCACTTTGAGCAGCTCTTCAAGGAGAGTGGGTCCTTCAGCAAGAACTTCCAGTCACCTGCAAAGCTAGCAGATAAGACAACACATGAGCTGACAAGGTCTCCTAGTAAAGCTGCGAGCATGTTTTCTGGCACCCAAGAAAAGTGTGCCACATGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAAGGGCAGGCCTATCACAAATCATGTTTCAAGTGTTCACATGGTGGATGTCCCATAACGCCGTCGAATTACGCAGCCCTTGAGGGCATTTTGTATTGCAAGCACCACTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTACTAAGTCTGCCTCAGTCAAACGTGCAGCAGCAGCAGCAGCAACAGCAACTGCAACGACCGTGGCCTCTGTTCCAGAATCTTGA 603 0.4627 MSFIGTQQKCKACEKTVYPVDQLSADGTAYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHFEQLFKESGSFSKNFQSPAKLADKTTHELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLTKSASVKRAAAAAATATATTVASVPES 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02284 200 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Gma11g02284 200 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Gma11g02284 200 SMART lim_4 9 61 IPR001781 -
Gma11g02284 200 SMART lim_4 107 159 IPR001781 -
Gma11g02284 200 CDD LIM2_SF3 108 168 - -
Gma11g02284 200 Pfam LIM domain 108 163 IPR001781 -
Gma11g02284 200 Pfam LIM domain 10 65 IPR001781 -
Gma11g02284 200 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 187 - -
Gma11g02284 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 100 133 - -
Gma11g02284 200 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Gma11g02284 200 Gene3D Cysteine Rich Protein 4 74 - -
Gma11g02284 200 Gene3D Cysteine Rich Protein 102 172 - -
Gma11g02284 200 PANTHER OS06G0237300 PROTEIN 1 187 IPR045268 GO:0051015
Gma11g02284 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Gma11g02284 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 173 - -
Gma11g02284 200 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Gma11g02284 200 CDD LIM1_SF3 6 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02284 Gma-Chr11 38223686 38227054 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Gma11g02284 LIM 3.4e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02284 K09377 - gmx:100786139 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00288 18 2396771 2399282 Gma11g02284 11 38223686 38227054 GST