Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma11g02278 | ATGAAGAACCTCAAAATGTCGGTTGCAGAGGATAAGTCTCAGTCTGAATATGAGATTATGGTGAAGAGGAATTGCAGGATTTGCTACCTCAGCATGGACATGGACATGACAAACCATAACAATGAATCAGCTGGGAATGCCATGACTCCCATTGAGCTGGGTTGTTCTTGTAAAGAGGATTTGGCTGCTGCTCACAAACACTGTGCTGAGGCTTGGTTCAAGGTCAAGGGTAACAAAGTTTGTGAAATCTGTGGATCCATTGCACGCAATGTAACTGTTGTAGCTGAAGTCCAAACGAATGAACAGTGGAATGAAGCAAATAATAATGCCTCAATGGTACCACCACCAACTGGACCTGCCCCCCAAGCAGAAACTCGACATCTCTGGCAGAGCCAACGGTTCCTGAATTTCATTCTTTCGTGTTTGGTCTTGGCTTTTGTCATATCCTGGCTTTTTCACTTCAATATGCCCTCATGA | 477 | 0.4444 | MKNLKMSVAEDKSQSEYEIMVKRNCRICYLSMDMDMTNHNNESAGNAMTPIELGCSCKEDLAAAHKHCAEAWFKVKGNKVCEICGSIARNVTVVAEVQTNEQWNEANNNASMVPPPTGPAPQAETRHLWQSQRFLNFILSCLVLAFVISWLFHFNMPS | 158 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma11g02278 | 158 | SMART | ringv_2 | 24 | 85 | IPR011016 | GO:0008270 | |
Gma11g02278 | 158 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 10 | 158 | - | - | |
Gma11g02278 | 158 | Pfam | RING-variant domain | 25 | 84 | IPR011016 | GO:0008270 | |
Gma11g02278 | 158 | SUPERFAMILY | RING/U-box | 22 | 87 | - | - | |
Gma11g02278 | 158 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 8 | 95 | IPR013083 | - | |
Gma11g02278 | 158 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 17 | 91 | IPR011016 | GO:0008270 | |
Gma11g02278 | 158 | PANTHER | ZINC FINGER, RING-CH-TYPE | 10 | 158 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma11g02278 | Gma-Chr11 | 38165906 | 38167199 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma11g02278 | 22 | 158 | C3H Transcription Factor Family | AT5G05830 | 58.394 | 2.44e-53 | 166 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma11g02278 | - | - | gmx:100797057 | 333.569 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma03g00657 | 03 | 20389571 | 20393148 | Gma11g02278 | 11 | 38165906 | 38167199 | ECH | |
Gma18g01777 | 18 | 49518290 | 49520867 | Gma11g02278 | 11 | 38165906 | 38167199 | ECH | |
Gma07g01308 | 07 | 17229101 | 17233526 | Gma11g02278 | 11 | 38165906 | 38167199 | ECH | |
Gma11g02278 | 11 | 38165906 | 38167199 | Gma11g02278 | 11 | 38165906 | 38167199 | ECH |