Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02278 ATGAAGAACCTCAAAATGTCGGTTGCAGAGGATAAGTCTCAGTCTGAATATGAGATTATGGTGAAGAGGAATTGCAGGATTTGCTACCTCAGCATGGACATGGACATGACAAACCATAACAATGAATCAGCTGGGAATGCCATGACTCCCATTGAGCTGGGTTGTTCTTGTAAAGAGGATTTGGCTGCTGCTCACAAACACTGTGCTGAGGCTTGGTTCAAGGTCAAGGGTAACAAAGTTTGTGAAATCTGTGGATCCATTGCACGCAATGTAACTGTTGTAGCTGAAGTCCAAACGAATGAACAGTGGAATGAAGCAAATAATAATGCCTCAATGGTACCACCACCAACTGGACCTGCCCCCCAAGCAGAAACTCGACATCTCTGGCAGAGCCAACGGTTCCTGAATTTCATTCTTTCGTGTTTGGTCTTGGCTTTTGTCATATCCTGGCTTTTTCACTTCAATATGCCCTCATGA 477 0.4444 MKNLKMSVAEDKSQSEYEIMVKRNCRICYLSMDMDMTNHNNESAGNAMTPIELGCSCKEDLAAAHKHCAEAWFKVKGNKVCEICGSIARNVTVVAEVQTNEQWNEANNNASMVPPPTGPAPQAETRHLWQSQRFLNFILSCLVLAFVISWLFHFNMPS 158
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02278 158 SMART ringv_2 24 85 IPR011016 GO:0008270
Gma11g02278 158 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 158 - -
Gma11g02278 158 Pfam RING-variant domain 25 84 IPR011016 GO:0008270
Gma11g02278 158 SUPERFAMILY RING/U-box 22 87 - -
Gma11g02278 158 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 95 IPR013083 -
Gma11g02278 158 ProSiteProfiles Zinc finger RING-CH-type profile. 17 91 IPR011016 GO:0008270
Gma11g02278 158 PANTHER ZINC FINGER, RING-CH-TYPE 10 158 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma11g02278 Gma-Chr11 38165906 38167199 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02278 22 158 C3H Transcription Factor Family AT5G05830 58.394 2.44e-53 166
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02278 - - gmx:100797057 333.569
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g00657 03 20389571 20393148 Gma11g02278 11 38165906 38167199 ECH
Gma18g01777 18 49518290 49520867 Gma11g02278 11 38165906 38167199 ECH
Gma07g01308 07 17229101 17233526 Gma11g02278 11 38165906 38167199 ECH
Gma11g02278 11 38165906 38167199 Gma11g02278 11 38165906 38167199 ECH