Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02229 ATGATGATGTCTTCCGGGACATCCTCGTACTGGTGCTACCGCTGCAGCCGCTTCGTCCGTGTCTGGCCCCACCACACCGTCGTCTGTCCCGACTGCGACGGCGGCTTCATCGAAGAAATCGAACACCCGCCCCGCTCCGTCCACCTCGACCCCCGACGCCACCGCCATCGCTTCCCCGCTGCCGCCATGTACATGATCGGACAACGACCCTCCTCCGACCCCCGCCCCGCCTCATCCCTCCGcCGCACCCGCCGCAACGGCGGCGACCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGCGGCGCGGAGGACGAAAGTCGCGGCTTTGAACTCTTCTACGACGACGGCACCGGTTCCGGCCTCCGACCCCTGCCACCAAGCATGTCAGAGTTTCTTCTCGGATCTGGCTTCGATAGGCTTTTGGAACAACTCTCTCAGATTGAGATCAACGGTATTGGAAGGTACGAGCACCCTCCTGCTTCAAAAGCAGCCATTGATTCATTACCAACCATCGAAATCGATGACACCCATTTAGCCATGGAATCACACTGCGCGGTCTGCAAGGAAGCTTTTGAAACAAGCACTGCAGTTAGAGAAATGCCATGTAAGCACATATACCACCCTGAATGCATTTTACCATGGCTCGCACTTCACAACTCTTGCCCCGTTTGTCGCCACGAGTTACCCGCAGATACCCCAAATCCAAATCCAAATCCAAATTCGAATTCGAATTCGAACCAAAATCCGTCACAAAATGTTGGCTTGAACGAGGAAGAGAATGTTGGGTTGACGATTTGGAGGCTGCCCGGTGGAGGGTTTGCTGTTGGGAGATTCTCCGGTGGAAGAAGAGGTGCTGATAGAGAGCTTCCTGTGGTTTACACTGAAATGGATGGTGGGTTTAACAATGGGGGGGGTGAGCCGAGGAGGATTTCTTGGTCTAGAGGGAATAGAGGGAGGGAGAGTGGAGGGTTGAACAGGTTTTTCCGCAATTTGTTTGGTTGCTTCAGAGGAGGAAGTAGTAATACTAGTAGTAGTGGTGGTGCTAGTGCTACTCAGCGTTCTGCTTCTAGTAGAGAGTCTATGAGGGCGAGTTCCTCTCGTTCTAGTACTATGGATCTTTCGCCGCGGTCCCGCAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCATGGTAG 1182 0.5457 MMMSSGTSSYWCYRCSRFVRVWPHHTVVCPDCDGGFIEEIEHPPRSVHLDPRRHRHRFPAAAMYMIGQRPSSDPRPASSLRRTRRNGGDRSPFNPVIVLRGGAEDESRGFELFYDDGTGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFETSTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADTPNPNPNPNSNSNSNQNPSQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGADRELPVVYTEMDGGFNNGGGEPRRISWSRGNRGRESGGLNRFFRNLFGCFRGGSSNTSSSGGASATQRSASSRESMRASSSRSSTMDLSPRSRRTWSMDVNSGMRAW 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02229 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 4 336 - -
Gma11g02229 393 SMART ring_2 185 225 IPR001841 -
Gma11g02229 393 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Gma11g02229 393 Pfam Ring finger domain 184 226 IPR001841 -
Gma11g02229 393 MobiDBLite consensus disorder prediction 340 381 - -
Gma11g02229 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 336 - -
Gma11g02229 393 CDD RING-H2_RNF126_like 185 226 - -
Gma11g02229 393 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Gma11g02229 393 SUPERFAMILY RING/U-box 165 239 - -
Gma11g02229 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 232 IPR013083 -
Gma11g02229 393 MobiDBLite consensus disorder prediction 233 255 - -
Gma11g02229 393 MobiDBLite consensus disorder prediction 65 95 - -
Gma11g02229 393 MobiDBLite consensus disorder prediction 298 320 - -
Gma11g02229 393 Pfam Protein of unknown function (DUF1117) 262 368 IPR010543 -
Gma11g02229 393 MobiDBLite consensus disorder prediction 238 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02229 Gma-Chr11 37623929 37625900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02229 124 235 C3H Transcription Factor Family AT5G01980 40.179 1.88e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02229 - K11982 gmx:100784364 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00348 18 2931111 2932612 Gma11g02229 11 37623929 37625900 GST