Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02204 ATGGCACTGGCCAAAGACCAAAGAATTCCACGTGATTCAAGCATGAGCAGCAAGGTTCAAAACTGTGTTTTCAGTGAGACTAGCGTGGAGGTTACCTCCATGACTGTTCATAGGGTCAATGAGTACCACAAATCTGTGTTAGAAGATCAGGAAGATGGCTCACCAACTACTAATGGTCTCAGCAATGATTCAGCTATAACACATTCTCCTCCTCTATGTGGCAGTGTCAAAGGCTATGCTTATAAGGGCACAAACTATCAGCTTGAAGAAGCAGAACCTCTGATTAATTTCAAAGGGTATAGCAATCTCATGCAAGGTGGTGGATCTTTGCTTAGCTTTCAGCAGAACAAGATGGTCCCTAACAACTGTTACATGAAAGAAAATGGTCAGAAAGAGGTTTGTGTTTGGGAGAATAATTTGCATCAAGGCCGTGACCATTGGAATCAAACTAGTCCAAGAAACACTAGAGACATGCGCCTGGTAGAGAATGCCAATTGCTTTCAAACTTCTAGTGGCTATATCTCCATAGTTAATAATGCCAAAGAGAAACAACATGGCCAAAGTTCATCAGGGTTGCTCTACCCAGCACCAACTATTCCTAATGCTAGTAGCCTCCACAAGTTAGGAGCACAAGAATCAGTTTTGCAAAAGCGCCCTTTTATGGGGGAGAGCATGAAAGCTGCCAAGAAGCAATGCTCAATTGAGAGCAAAACGACCAAACATAATTCAAGCCCATCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGTGAGCGGTTGAAGATACTACAAGAACTGGTGCCTAATGGCTCCAAGGTGGTTGATTTGGTTACTATGCTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAACTGCAAGTGAAGGTTTTGGCAACCGATGAATTTTGGCCTGTCCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAAGAAGTCATCGATACCATTCTTTCATCACAAAAAGAGAGAAGTTCAAGCTCAAAGTAG 1023 0.4252 MALAKDQRIPRDSSMSSKVQNCVFSETSVEVTSMTVHRVNEYHKSVLEDQEDGSPTTNGLSNDSAITHSPPLCGSVKGYAYKGTNYQLEEAEPLINFKGYSNLMQGGGSLLSFQQNKMVPNNCYMKENGQKEVCVWENNLHQGRDHWNQTSPRNTRDMRLVENANCFQTSSGYISIVNNAKEKQHGQSSSGLLYPAPTIPNASSLHKLGAQESVLQKRPFMGESMKAAKKQCSIESKTTKHNSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEVIDTILSSQKERSSSSK 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02204 340 Gene3D - 244 307 IPR036638 GO:0046983
Gma11g02204 340 Pfam Helix-loop-helix DNA-binding domain 255 296 IPR011598 GO:0046983
Gma11g02204 340 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 330 - -
Gma11g02204 340 SMART finulus 251 301 IPR011598 GO:0046983
Gma11g02204 340 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 330 - -
Gma11g02204 340 MobiDBLite consensus disorder prediction 226 258 - -
Gma11g02204 340 MobiDBLite consensus disorder prediction 51 66 - -
Gma11g02204 340 CDD bHLH_AtIND_like 246 309 - -
Gma11g02204 340 MobiDBLite consensus disorder prediction 46 66 - -
Gma11g02204 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 305 IPR036638 GO:0046983
Gma11g02204 340 MobiDBLite consensus disorder prediction 237 251 - -
Gma11g02204 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 245 295 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02204 Gma-Chr11 37275337 37276942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02204 159 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 54.645 1.23e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma11g02204 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02204 - - gmx:100777047 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00368 18 3219442 3220924 Gma11g02204 11 37275337 37276942 GST
Gma11g02204 11 37275337 37276942 Gma14g00599 14 5837537 5839273 PCT
Gma11g02204 11 37275337 37276942 Gma02g02328 02 49378026 49379461 PCT
Gma14g00599 14 5837537 5839273 Gma11g02204 11 37275337 37276942 PCT
Gma02g02328 02 49378026 49379461 Gma11g02204 11 37275337 37276942 PCT