Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02201 ATGGGTTTCTCACAAGACCCCTGCACTGATTCCAATGCCCCAACCTCAACCTCTTCCACCTTAGTTGTAGATCACTACTGTGACTACGACAAGCTCAAATTCAAAACCTTTCTCAGAAAAATGTTCTGGGAATTCGGTCTCGCCTGTGTGGCCAACCCTTCCCAGCGCCGGAGAAGCTCCGGCGACGGCAAAAAGACGAACATGGAGAACAACAAGGCGTGGCTGCTTGCGGAGTCTGGTGGGTGTGGAGCAGAATTGACCAATGCTGACCCTCAATCGGTTCACTCCTCTTTCAGGTTCAGCTTCTGTTCTCAGGTTGAGTTGGAGTCCCTGAACATGAGTTCTTCGGCTGCTGCAACGGTTTTGATGGTGAATTTGGACAATGGGGTGAGTGAATCGCGCGCCAATGAAATGAAGTGGAGGAGAATGGAGTCGTTGGAGAAGAGCATATCCCCTGTGGCTCACACCTTGATCAGGTTTAGCTATGGTGAAATTATGTCTGCTACTAGAAATTTCTCCAAAGGGAGGGTGTTGGGGAGAGGAGCATTGAGCTGTGTTTTTAGAGGGAGAGTTGGGATTTTGAGGACTGCCGTGGCGATCAAACGGTTGGACAAGGAAGACAAGGAATCTGCCAAGGCCTTTTGTAGAGAACTGATGATTGCAAGTTCTCTTCATAGTTCAAATGTTGTTCCCCTTTTGGGGTTTTGTATTGATCCTGAGGAGGGTTTGTTTTTGGTGTACAAGTATGTCTCAGGGGGAAGCTTGGAGCGCCACTTGCATGGAAGGAAGAAGGGTAGCTCGCCTCTTCCATGGCCTGTGAGGTACAAAGTTGCAATTGGGATTGCTGAAGCTGTGGCTTATCTACATAGTGGAACTGAAAGATGTGTTGTGCACAGAGACATTAAACCCTCAAACATTCTGCTTTCTTCAAGGAAGACTCCCAAGCTATGTGATTTTGGATTAGCTACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGATATTTGGCCCCTGAGTATTTCCAACATGGGAAAGTATCAGACAAGACTGATGTATATGCTTTTGGAGTGGTTTTGTTGGAACTCATTACTGGCCGGAAGCCGATTGAGGCAACAAGACCTTCAGGAGATGAGAACTTGGTCTTATGGGCTAAACCTTTTCTACAAAAAGGGAAAGGAGCAATTGAAGAGTTGCTCGATCCTCAACTCAAGTGCAGTCTTAAATTCTCAAATCAAATGGGTAGAATGATTGAAGCAGCAGCTGCCTGTGTCACAAATGAAGAATCTCGACGACCTGGCATACGTGAGATTATTGCAATACTGAAAGGTGAAGAAGAACCTCTTCTCTCCAAAAGAAAGAAGTCCAGTTTTCTTGGGAATGGATGTGTGATTGATTGTTATTCTCAGTTACAACAAACAAATAATGAGATGAAAAGTCACTTGGCATTAGCAATGTTAGGTGTTGCAGAGTTTGAGGATGATGATTATCTCTATGGTCGATAA 1527 0.4525 MGFSQDPCTDSNAPTSTSSTLVVDHYCDYDKLKFKTFLRKMFWEFGLACVANPSQRRRSSGDGKKTNMENNKAWLLAESGGCGAELTNADPQSVHSSFRFSFCSQVELESLNMSSSAAATVLMVNLDNGVSESRANEMKWRRMESLEKSISPVAHTLIRFSYGEIMSATRNFSKGRVLGRGALSCVFRGRVGILRTAVAIKRLDKEDKESAKAFCRELMIASSLHSSNVVPLLGFCIDPEEGLFLVYKYVSGGSLERHLHGRKKGSSPLPWPVRYKVAIGIAEAVAYLHSGTERCVVHRDIKPSNILLSSRKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEATRPSGDENLVLWAKPFLQKGKGAIEELLDPQLKCSLKFSNQMGRMIEAAAACVTNEESRRPGIREIIAILKGEEEPLLSKRKKSSFLGNGCVIDCYSQLQQTNNEMKSHLALAMLGVAEFEDDDYLYGR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02201 508 Pfam Protein kinase domain 173 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02201 508 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 1 506 - -
Gma11g02201 508 ProSiteProfiles Protein kinase domain profile. 172 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02201 508 Gene3D Transferase(Phosphotransferase) domain 1 250 464 - -
Gma11g02201 508 SMART serkin_6 172 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02201 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Gma11g02201 508 SUPERFAMILY Protein kinase-like (PK-like) 155 455 IPR011009 -
Gma11g02201 508 Gene3D Phosphorylase Kinase; domain 1 131 249 - -
Gma11g02201 508 PANTHER OS01G0750732 PROTEIN 1 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02201 Gma-Chr11 37231886 37235490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02201 159 452 Trihelix Transcription Factor Family AT1G70460 42.568 3.48e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gma11g02201 Pkinase 3.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02201 - - gmx:100808074 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00370 18 3241807 3245066 Gma11g02201 11 37231886 37235490 GST
Gma11g02201 11 37231886 37235490 Gma14g02105 14 52135124 52138246 PCT
Gma11g02201 11 37231886 37235490 Gma02g02326 02 49347791 49350670 PCT
Gma14g02105 14 52135124 52138246 Gma11g02201 11 37231886 37235490 PCT
Gma02g02326 02 49347791 49350670 Gma11g02201 11 37231886 37235490 PCT