Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02189 ATGGCTTCTTCCTTGGACATGTCACTTGATGATAGAATAAAGAACAGAAGTAACAACAGAGGGAGAGGTAGAGGAGGACGTGGCAGAGCTCATTCTGGCCGTGGACCAAGCGGCACTCttaatggtagaagaatggttggtgctgttaatagtagaagaatggctggcgctggtaatggtggaagaaCAACTGGTGCTGTTCGTAGAGGGCCTCTTATGGTTAACACTCGGCCGTCGTCGTATGCTATTGCCAAGGCAAGCTCAAAAAACTCTATTCGCAGAGCTAGGCCTTTTCCATGGCAGCATGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAATTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTTTGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTCGTTTATACTAGAAGAAGTGATGCATTTGCTGCCCTTAAACGATATAATAACGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATTCAGAATTGCCCATAAGTGCTCGGGTAAATGTCACTGGGGTGAATGGACGTAGGAAGAGGACTGTTGTAATGACGTCTAGAGGTGGACAAGCTGGAGGTGGTCCTGCTATGCCTACACGTGGTGCTGGTTGGGGACGTCGAGGTGGCCCAAGGAGTGGCAGTGGACGTGGTGGAGCTGGAGGTCGAGGTCGTGGTCGCGGCAGGGGTGGAGCTGGAGGTAGAGGTCGTGGGAGAAAGGACGCTGTTGAGAAGTCAGCGGAGGAACTTGACAAGGAGCTGGAGACCTATCATGCTGAGGCCATGAACATCTCTTGA 912 0.455 MASSLDMSLDDRIKNRSNNRGRGRGGRGRAHSGRGPSGTLNGRRMVGAVNSRRMAGAGNGGRTTGAVRRGPLMVNTRPSSYAIAKASSKNSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVTGVNGRRKRTVVMTSRGGQAGGGPAMPTRGAGWGRRGGPRSGSGRGGAGGRGRGRGRGGAGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02189 303 Coils Coil 278 298 - -
Gma11g02189 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Gma11g02189 303 PANTHER THO COMPLEX SUBUNIT 4C 1 302 - -
Gma11g02189 303 SMART FoP_duplication_2 226 303 IPR025715 -
Gma11g02189 303 CDD RRM_THOC4 121 195 - -
Gma11g02189 303 MobiDBLite consensus disorder prediction 1 43 - -
Gma11g02189 303 SMART rrm1_1 122 194 IPR000504 GO:0003723
Gma11g02189 303 Gene3D - 116 198 IPR012677 -
Gma11g02189 303 MobiDBLite consensus disorder prediction 272 296 - -
Gma11g02189 303 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 302 - -
Gma11g02189 303 MobiDBLite consensus disorder prediction 225 303 - -
Gma11g02189 303 SUPERFAMILY RNA-binding domain, RBD 50 195 IPR035979 GO:0003676
Gma11g02189 303 Pfam C-terminal duplication domain of Friend of PRMT1 244 297 IPR025715 -
Gma11g02189 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02189 Gma-Chr11 37084669 37088783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02189 120 201 Eukaryotic Initiation Factors Gene Family AT2G23350 36.585 2.90e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02189 K12881 - gmx:100820344 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00380 18 3361040 3365120 Gma11g02189 11 37084669 37088783 ECH
Gma11g02189 11 37084669 37088783 Gma11g02189 11 37084669 37088783 ECH
Gma18g00380 18 3361040 3365120 Gma11g02189 11 37084669 37088783 GST