Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02174 ATGACTAGAAAGAAGGTGAAGTTGGCATTCATAGCCAATGACTCAGCTAGGAAGGCAACATTCAAGAAAAGGAAGAAGGGTCTAATGAAGAAGGTTAGTGAACTTAGCACCCTTTGTGGGATTGATGCATGTGCAATTGTTTACAGTTCCTATGATCCTCAACCTGAGGTTTGGCCATCCCCAATGGGGGTTCAAAGGGTGCTTAGTAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGGATCATGAAGGCCAAAGACCAGTTGAAGAAACAAAGGAAGGATAATAGGGAAAAGGAGATGACTCAGCTCATGTTTCAATACCTTAGTGCAGGTAAGATCATGCACAATATAAGCATGGTTGACTTGAATGATCTGGCTTGGTTGATTGACCAGAACTTGAAGGATATCAACAGAAGGATTGAGGTGTTGACTAAGAATGTTCAAAGTCAACCACAAATTGCAGCACCAGTGGTGACTGATGTTGTTGCCAAGGTTGAAGACAATGGACAAGGGAGTCAGCATGGCCAGCAGGGGTTTGATATCAACGTGGATCTCATGCAGAAGCAGAATTGGTTTATGAATTTGATGAATAATGGCAGCGGCGACGGTGGTGCTGGGAATGAGGCTATGCCTTTTGTTGGAGATGTTAATCAACAAAATGGCTTTTGGCCTAATCCTTTTTTCCATTGA 729 0.4321 MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSSYDPQPEVWPSPMGVQRVLSKFRRMPELEQSKKMVNQESFLRQRIMKAKDQLKKQRKDNREKEMTQLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNVQSQPQIAAPVVTDVVAKVEDNGQGSQHGQQGFDINVDLMQKQNWFMNLMNNGSGDGGAGNEAMPFVGDVNQQNGFWPNPFFH 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02174 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Gma11g02174 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 196 - -
Gma11g02174 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 - -
Gma11g02174 242 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
Gma11g02174 242 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Gma11g02174 242 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma11g02174 242 Coils Coil 87 114 - -
Gma11g02174 242 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Gma11g02174 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma11g02174 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma11g02174 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma11g02174 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02174 Gma-Chr11 36837832 36838560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02174 1 156 Type I MADS-box Gene Family AT5G48670 68.590 2.16e-67 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma11g02174 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02174 - - gmx:100816084 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00396 18 3582218 3582978 Gma11g02174 11 36837832 36838560 GST