Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02149 ATGTCACAACAAACACTAACACTAACGATTCTTCTATTTACACTCCTTAGTCTTACTTCTTCACCAGCCACTTGTTTATACTCTTCTCCTTCACCCCCCGCCGCGTCATTTTCCGAAACTACCCCCGATCCCGAACCTCGCGCCGAAGAATGGTTACCCGCCCAAGCAACTCACTACGCCGCCACCGACGCGGTCGGCGGCGCGTGCGGATACGGCGACCTCCTTAACGGCGGTTATGGCATGGCCACCGCCGCTCTCAGCGAGGCTCTCTTCGGGCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGGTGCCGCGAGGAGGACTCCGACTTTGACCGGCGGTGGTGCATCTCCGGCACGACGGTGGCCGTCACCGCCACAAATTTCTGCGCCCCGAACTACGGCTCCGACGCGGAGAGCGTGGGAGGACATTGCAACCCTCCGAAGCAGCATTTCGTGGTTCCAATTGAAGCATTCGAGAAAATGGCAATCTGGAAAACTGGCACTGGCAACATGCCCGTGGAGTATCGCAGGTTCTCCTTCACGCACTCTTGGTGTTATCATATAGTCATATAG 579 0.5769 MSQQTLTLTILLFTLLSLTSSPATCLYSSPSPPAASFSETTPDPEPRAEEWLPAQATHYAATDAVGGACGYGDLLNGGYGMATAALSEALFGRGQICGACFELRCREEDSDFDRRWCISGTTVAVTATNFCAPNYGSDAESVGGHCNPPKQHFVVPIEAFEKMAIWKTGTGNMPVEYRRFSFTHSWCYHIVI 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02149 192 Gene3D - 35 181 IPR036908 -
Gma11g02149 192 Pfam Lytic transglycolase 83 177 IPR009009 -
Gma11g02149 192 PRINTS Expansin signature 78 92 IPR002963 GO:0009664
Gma11g02149 192 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Gma11g02149 192 PRINTS Expansin signature 160 173 IPR002963 GO:0009664
Gma11g02149 192 PANTHER EXPANSIN-A15 22 181 IPR002963 GO:0009664
Gma11g02149 192 SUPERFAMILY Barwin-like endoglucanases 50 180 IPR036908 -
Gma11g02149 192 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 179 IPR007112 -
Gma11g02149 192 PANTHER EXPANSIN-A13 22 181 - -
Gma11g02149 192 SMART dpbb_1 83 177 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02149 Gma-Chr11 36515961 36516539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02149 50 181 Expansin Gene Family AT3G03220 69.630 9.08e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02149 - - gmx:102667045 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00417 18 3842939 3845947 Gma11g02149 11 36515961 36516539 GST
Gma11g02149 11 36515961 36516539 Gma14g02053 14 51637689 51639958 PCT
Gma11g02149 11 36515961 36516539 Gma02g02277 02 48837601 48839332 PCT
Gma14g02053 14 51637689 51639958 Gma11g02149 11 36515961 36516539 PCT
Gma02g02277 02 48837601 48839332 Gma11g02149 11 36515961 36516539 PCT