LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma11g02109	ATGGTGCAACTAAAGCTCATAGCCTTAACCTTGTTGGTGTTGTGGTCATGGTGGAGCTTTGAGGGTACAGTTGGAGACCCTCAACTCTTTCTACTCAAATGGGAGTGCGGCGTAGTCTCGGTACATGACTTGTCCAACTTCAACCAAAATCGTAACGCAATTTTGGCAGACCTGAGAGTGCAGGTGAGAAACCAAAGCAAGTACTTTGCCACGGCTGAATCAACCAGCGGAGCAGACCCTGTTTATGCCATGTTCCAATGCAGGAACTACCTCTCCAAAAATGACTGTGCCGCCTGCTTTGCCGCCACCGCCACCAATATCCGTAACTGCTCCGCCGGAAATACTGGCCGTATAGTTTATGACGGCTGCTTCCTCAGGTACGAGAACAATGACATCTTTGACCACAGTTTCATTTCTGGCCTCCACACACTTTGTGGAAATCAGACTGCAGATGAAAGCACAGGTTTTGGTGCAGTTGGACGGCAAGTGATGATGGATCTACAAATAGCAACACCCAAAATTAGTGGCTACTTTGCAGCTACCAAGACACAAGTGGCTGGCGGTGTAATCTATGCCTTTGCTCAATGTGCTGAAATTCTCACACAAGAAACTTGTTCAGACTGTTTGTCAATTGCACAGAGCGGCATACAAGATTGTCTTCCAAATACAGACGGTAGGGGAGTCAATCCCCCTGTGTGCTTTATGAGATACTCGGAGACACCTTTCTTTGCTGATAACCAAACTACTGATATCAGCCCCTACCTAAAACAAGGAGGAGGAGTTTCAATCAAGAATTGGGTTGTTATTGTTAGTGGTGGTGTTGCAGGTGCACTCCTTGTTGTGATCCTTATTTCATTATTTTGGTGGCATAGAAGATCCCAAAGTCCGACGAGAGTTCCTAGAAGTATCATAATGGGAGCAACTGAGTTGAAAGGTCCAACCAAGTACAAGTATAGTGACTTGAAAGCTGCAACACAAAATTTCAGTGAGAAAAACAAACTAGGAGAAGGAGGTTTTGGCGCTGTATACAAGGGGACTATGAAAAATGGGAAAGTTGTTGCAGTCAAGAAATTAATTTCAGGAAATTCCAGCAACATAGATGATGAATTTGAAAGTGAAGTAACGCTTATAAGTAATGTTCATCATAGAAATCTTGTTCGTCTTCTTGGTTGTTGCAGTAAAGGCCAAGAAAGAATCCTTGTTTACGAATACATGGCAAATGCCAGCCTAGACAAATTATTATTTGGACAACGAAAAGGCTCCCTCAACTGGAAACAACGCCGTGATATAATTTTGGGCACAGCAAGGGGATTGACTTATCTACATGAAGAATTTCATGTTTCTATCACACATAGAGATATTAAGAGTGCCAATATCCTATTGGATGAACAACTTCAGCCCAGAATTTCTGATTTTGGGTTGGTGAAGCTCCTTCCAGGAGACAAATCTCATATTACCACAAGATTTGCTGGGACATTAGGATACATAGCACCTGAGTATGCACTCCATGGTCAATTATCAGAAAAGGCTGATACATACAGCTATGGAATTGTAGTCTTAGAAATCATAAGTGGTCAAAAGAGTACCAATGTGAAGGTTCTTGATGATGATGGTGAGGATGAATACCTTCTTCGACGAGCATGGAAGTTGTATGAAAGAGGCATGCACTTGGAGTTAGTGGACAAAAGCTTAGACCCTTATAGCTATGATGCAGAAGAAATGAAGAAAGTGATAGGCATTGCTTTGCTGTGCACTCAAGCATTGGCTGCAATGAGGCCAAACATGTCTGAAGTAGTAGTCCTACTTAGTAGCAATGACTTACTTGAGCATATGAGACCTTCCATGCCTATCATTATTGAGTCGAATTTAAGGCCCCAAAGAGATATCTCTTCTTCAACTGCTTCCTCTACGACTAATGCAACTATCTCCAATTCAATAGTACCCGCTCGATGA	1953	0.427	MVQLKLIALTLLVLWSWWSFEGTVGDPQLFLLKWECGVVSVHDLSNFNQNRNAILADLRVQVRNQSKYFATAESTSGADPVYAMFQCRNYLSKNDCAACFAATATNIRNCSAGNTGRIVYDGCFLRYENNDIFDHSFISGLHTLCGNQTADESTGFGAVGRQVMMDLQIATPKISGYFAATKTQVAGGVIYAFAQCAEILTQETCSDCLSIAQSGIQDCLPNTDGRGVNPPVCFMRYSETPFFADNQTTDISPYLKQGGGVSIKNWVVIVSGGVAGALLVVILISLFWWHRRSQSPTRVPRSIIMGATELKGPTKYKYSDLKAATQNFSEKNKLGEGGFGAVYKGTMKNGKVVAVKKLISGNSSNIDDEFESEVTLISNVHHRNLVRLLGCCSKGQERILVYEYMANASLDKLLFGQRKGSLNWKQRRDIILGTARGLTYLHEEFHVSITHRDIKSANILLDEQLQPRISDFGLVKLLPGDKSHITTRFAGTLGYIAPEYALHGQLSEKADTYSYGIVVLEIISGQKSTNVKVLDDDGEDEYLLRRAWKLYERGMHLELVDKSLDPYSYDAEEMKKVIGIALLCTQALAAMRPNMSEVVVLLSSNDLLEHMRPSMPIIIESNLRPQRDISSSTASSTTNATISNSIVPAR	650

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma11g02109	650	Pfam	Salt stress response/antifungal	43	129	IPR002902	-
	Gma11g02109	650	Pfam	Salt stress response/antifungal	149	239	IPR002902	-
	Gma11g02109	650	Gene3D	Phosphorylase Kinase; domain 1	293	404	-	-
	Gma11g02109	650	ProSiteProfiles	Protein kinase domain profile.	328	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma11g02109	650	ProSiteProfiles	Gnk2-homologous domain profile.	29	132	IPR002902	-
	Gma11g02109	650	ProSitePatterns	Protein kinases ATP-binding region signature.	334	357	IPR017441	GO:0005524
	Gma11g02109	650	Gene3D	-	30	131	IPR038408	-
	Gma11g02109	650	Gene3D	-	138	242	IPR038408	-
	Gma11g02109	650	SMART	serkin_6	328	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gma11g02109	650	CDD	STKc_IRAK	334	599	-	-
	Gma11g02109	650	MobiDBLite	consensus disorder prediction	628	650	-	-
	Gma11g02109	650	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	21	647	-	-
	Gma11g02109	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468
	Gma11g02109	650	ProSiteProfiles	Gnk2-homologous domain profile.	138	242	IPR002902	-
	Gma11g02109	650	Gene3D	Transferase(Phosphotransferase) domain 1	405	613	-	-
	Gma11g02109	650	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	21	647	-	-
	Gma11g02109	650	SUPERFAMILY	Protein kinase-like (PK-like)	312	627	IPR011009	-
	Gma11g02109	650	Pfam	Protein kinase domain	328	529	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma11g02109	Gma-Chr11	35544450	35551417	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma11g02109	2	650	Receptor kinase-like Gene Family	AT1G70520	35.401	1.76e-121	374

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gma11g02109		Pkinase	2.1e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma11g02109	-		-	gmx:100787379	1269.99