Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02108 ATGCGAGTGAGGGCTTTCAAAGCAGAACTCAAACAAGGTGAGGTGAGTAGCTCAACTTCAGCACAACACAGAGTCACGAGTAAGCCTATTCCTGAAATTCCAGAGGATTTGTACCATTTGATTAAGAAGGCAGTTTCAATTAGGAAGCATCTTGAGAGGAACAAGAAGGACAAGGACTCCAAGTTCAAGTTGATTCTTATTAACAGCAGAATCTACCGACTCGCTCGCTACTACAAGACTAAAGAAGCTCCCGCTAGTTTGGAAGTAGTAAGTTCCAAGTTCCCACCCATTACCCTACTATGA 303 0.4323 MRVRAFKAELKQGEVSSSTSAQHRVTSKPIPEIPEDLYHLIKKAVSIRKHLERNKKDKDSKFKLILINSRIYRLARYYKTKEAPASLEVVSSKFPPITLL 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02108 100 CDD Ribosomal_S15p_S13e 31 81 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gma11g02108 100 PANTHER RIBOSOMAL PROTEIN S15P/S13E 30 85 IPR023029 -
Gma11g02108 100 PANTHER 40S RIBOSOMAL PROTEIN S13 30 85 - -
Gma11g02108 100 SUPERFAMILY S15/NS1 RNA-binding domain 31 83 IPR009068 -
Gma11g02108 100 Gene3D - 31 94 - -
Gma11g02108 100 SMART Ribosomal_S15_2 16 90 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gma11g02108 100 Pfam Ribosomal protein S15 32 83 IPR000589 GO:0003735|GO:0005840|GO:0006412
Gma11g02108 100 ProSitePatterns Ribosomal protein S15 signature. 47 77 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02108 Gma-Chr11 35540260 35541676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02108 31 84 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 83.636 3.07e-27 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02108 K02953 - bmy:BM_BM13719 97.8265