Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02093 ATGCTGCAACTTAAGCTTCTTGCCCTAACTTTGATATGGTGGAGCTGTATTAACTTGGATTATGCAGCTGCAGCCACACGTGACACACGTCTAATTAATTCTGGGTGTAGCCCATTCAATGCTTCCAACACGCGTAGCTTCTTTGCAAATGTCAATGATTCGATCTCAGAGCTGAGAGGAGAAATCAGCAACCAAAGCCTGCACTTTGGCACATTCAAGAAATCCAGGGGAGATGTCAATACATATACTATGTTTCAATGCAGAAACTATCTCTCCAAAAATGACTGTCTTGCTTGCTTCAATAATGCCTCCATCCAAATCCGGGATATATGCAAAATTGCCAACGGCGCCAGAGTCATCTACAATGACTGCTTCCTAAGGTATGAGAGCGAGAGGTTCTACCAACAGACCAATGAACTTGGCGGTGGGGTAACATGTGGGAACATCAGTTCAAATGCCACTAATTTAAAAGTAGTTGGACAACAAGTGCTAAATGATCTCCAACTAGCAACACCCAAAACTAAAGGTTTTTATGCAGCTACTAAGACAAAGGTGGATGGTGATAGAGCAATTTATGCCATTGCACAGTGTGTTGAATCTGCCACACAGACTAAATGTCTGGATTGCATGCAAGTCGGATTCAATAACTTACAAAGTTGCCTTCCCAACACAGATGGTACAGCATATGATGCTGGCTGTTTCATGAGATACTCCATGACACCCTTGTTTGCTGATAATCAAACCATTGACATCAGACCCTATTTAAAAGAAGGAGGTTCAAGCAAGAAGTGGGCTATAATAGGTGGAGTTGTTGGAGGTGTTGTTCTCCTCCTATTGTTGTTTGCCCTACAATGGTCTAGAAAAACAAAGAAAGTTCACAGGGCAGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAGTTTAAAGATTTGAAAGTTGCAACAAAAAATTTCAGTGCTGAAAATAAACTTGGAGAAGGAGGTTTTGGCGCTGTATATAAGGGTACTTTGAAGAATGGAAAAATTGTTGCCATCAAGAAACTAGTGTTGGGGAAATCAAGCAAGATGGAGGATGATTTTGAAAGTGAAGTGAAACTTATAAGTAATGTTCATCATCGGAATCTCGTTAGACTTCTTGGTTGTTGTACCAAAGGCCAAGAGAGAATCCTGGTTTACGAATACATGGCAAATAGTAGTCTTGACAAATTCTTGTTTGGTGACAAAGGTGTCCTCAATTGGAAACAACGGTATGATATAATTTTAGGCACAGCAAGAGGACTAGCATATCTACATGAGGAATTTCATGTGTCCATTATACATAGAGATATAAAGACTGCTAATATCCTCTTAGATGATGATCTTCAGCCCAAAATTGCTGATTTTGGGTTGGCTAGGCTTCTTCCACGGGATCGTTCCCATCTTAGTACAAAATTTGCAGGAACATTGGGATACACAGCACCTGAGTATGCAATGCAAGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGAATTGTAGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGATTGATGAGGAGGGTCGTGAGTACCTTCTTCAACGAGCATGGAAACTGTATGAGAGAGGCATGCAGTTATCACTTGTCGACAAGGAAATAGACCCTAATGAATATGATGCAGAAGAAATGAAAAAAATCATAGAAATTGCATTATTATGCACTCAAGCAACAGCTGCAATGAGGCCAACAATGTCTGAATTAATAGTGCTGCTCAAAAGCAAGAGCTTAGTGGAGCACCTGCGACCAACTATGCCTGTGTTTGTTGAAACGAATATGATGAATCGGGAAGGCATGTCTGCTGGTGGTTCATCTAATGCTACTGCCTCCATTTCTGTTTTATCAGCTCGATGA 1917 0.4079 MLQLKLLALTLIWWSCINLDYAAAATRDTRLINSGCSPFNASNTRSFFANVNDSISELRGEISNQSLHFGTFKKSRGDVNTYTMFQCRNYLSKNDCLACFNNASIQIRDICKIANGARVIYNDCFLRYESERFYQQTNELGGGVTCGNISSNATNLKVVGQQVLNDLQLATPKTKGFYAATKTKVDGDRAIYAIAQCVESATQTKCLDCMQVGFNNLQSCLPNTDGTAYDAGCFMRYSMTPLFADNQTIDIRPYLKEGGSSKKWAIIGGVVGGVVLLLLLFALQWSRKTKKVHRAGDILGATELKGPVNYKFKDLKVATKNFSAENKLGEGGFGAVYKGTLKNGKIVAIKKLVLGKSSKMEDDFESEVKLISNVHHRNLVRLLGCCTKGQERILVYEYMANSSLDKFLFGDKGVLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDDLQPKIADFGLARLLPRDRSHLSTKFAGTLGYTAPEYAMQGQLSEKADTYSYGIVVLEIISGQKSTDVKIDEEGREYLLQRAWKLYERGMQLSLVDKEIDPNEYDAEEMKKIIEIALLCTQATAAMRPTMSELIVLLKSKSLVEHLRPTMPVFVETNMMNREGMSAGGSSNATASISVLSAR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02093 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Gma11g02093 638 Pfam Salt stress response/antifungal 161 238 IPR002902 -
Gma11g02093 638 Pfam Salt stress response/antifungal 40 130 IPR002902 -
Gma11g02093 638 ProSitePatterns Protein kinases ATP-binding region signature. 328 351 IPR017441 GO:0005524
Gma11g02093 638 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 12 632 - -
Gma11g02093 638 ProSiteProfiles Protein kinase domain profile. 322 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02093 638 ProSiteProfiles Gnk2-homologous domain profile. 137 242 IPR002902 -
Gma11g02093 638 CDD STKc_IRAK 328 594 - -
Gma11g02093 638 Gene3D Transferase(Phosphotransferase) domain 1 399 604 - -
Gma11g02093 638 SMART serkin_6 322 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02093 638 Pfam Protein kinase domain 323 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02093 638 Gene3D - 28 133 IPR038408 -
Gma11g02093 638 Gene3D - 144 241 IPR038408 -
Gma11g02093 638 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Gma11g02093 638 SUPERFAMILY Protein kinase-like (PK-like) 310 615 IPR011009 -
Gma11g02093 638 Gene3D Phosphorylase Kinase; domain 1 285 398 - -
Gma11g02093 638 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 12 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02093 Gma-Chr11 35142372 35146825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02093 30 638 Receptor kinase-like Gene Family AT1G70520 36.102 9.76e-122 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma11g02093 Pkinase 4.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02093 - - gmx:112997608 1076.62