Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02080 ATGGTGGTGCAAGTGCAACACAATCTCCTCTTAGTCATAACTTTCTTGATGTTGTTGTGGTCATGGTGGAGCCTTTTGGGTGCACTAGGAGACCCTCAAACCCATTTAATCAACAAGGGGTGTAGCCAATACGACGCAACCGACTTGTCCAACTTCAACCAAATCCTAAACGAAACTTTGGATGACCTTAGAGCACAGGTTAGCAACCAAAGCAAGCACTTTGCCACTGCTCAAAAAGCTAGAGGAGCAGACCCTGTCTATGCCATGTTTCAGTGTAGGAACTACCTCTCCACCGCCGACTGCGCCGCCTGCTTCGTGGTTGCTGCCGCCCAAATCCGCAATTGCTCAGTCGGAGCCAACGGTGCCCGGGTCATCTATGATGGTTGCTTCCTTAGGTATGAGAGCAATGGCTTCTTTGACCAGACCACACTGGCTGGCAACAGTATGATTTGTGGAAATCAGACAACAGTAGGAGCCACCCCATCGTTTAATACAACTGCACAGCAAGTGCTAATGGACCTGAAAATTGCAACACCAAAAATTACTGGTTTCTTTGCAGCTACCAAGACACAATTGGCTGGTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTGCCACAGAGAGTGCTTGTTTGGATTGCCTGACAGTTGGATACAACAACATACATATGTGTTTACCCAACACAGATGGCAGAGCATTTGATGCAGGATGCTTTATGAGATACTCAGAGACAGCATTTTTTGCTGATAACCAGACCATTGATATCGCACCCTTCTTGAAACAAGGAGGTTCAAGCAACAAGAAGGGAGCCATTATAGGTGGTGTTGTTGGAGGTGTAGGTCTTGTTGTAATCCTCCTTGCACTATTTGGCTTGCTTAGACGGTATAAGAAACCCAAGAGGGTTCCTATAGGTGACATATTGGGAGCAACCGAGTTGAAAGGTCCAGTTTCCTATAGGTATAAGGATTTGAAGACTGCAACAAAAAATTTCAATGATGAAAATAAGCTAGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAaatgggaaaatagttgcagtaaaaaaattaatcttaggccaatccgggaagatggatgaacaatttgaaagtgaagtcaagcttataagtaatgttcatcacaagaatctggttcgacttcttggatgttgcagtaaaggtcaagagagaatccttgtttatgaatacatggcaaataaaagcttggacagattcttatttgCAGGTGAAAATAAGGGTTCTCTCAACTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCCtatctacatgaggatttccacgtttgcatcatacatagggatataaagaccagcaatatcctcttggatgatgagatgcagccaagaattgctgattttgggttggcaagacttctaccagaggaccaatctcatcttagcacaagatttgcaggaacattgggatacacagcacctgagtatgccatccatggtcagttatctgagaaggctgatgcatacagctttggtgttgtagtccttgaaatcgtaagtggccaaaagagcagtgAATTGAGGGCAGATGCTGATGGTGAATTCCTCCTTCAAAGGGCATGGAAACTACATGTGCAAGATATGCATTTGGACTTGGTTGACAAGACATTGTTGGACCCTGAAGACTATGATGCAGAAGAAGTGAAGAAAATCATAGAGATTGCTTTGCTTTGCACTCAAGCATCAGCTGCTGCAAGGCCAACAATGTCTGAAATAGTAGCTTTTCTCAAATGCAAGAATTCACTGGGGCAAATAAGGCCTTCTATGCCTGTCTTTGTAGAATCTAACTTTAGGACTCGGGCAGAAACCTCTACCTCGACTGGTTCCTCCACATCTAATGCTACTGCTTCCATTTCTATGCTCTCAGCTCGATGA 1965 0.3399 MVVQVQHNLLLVITFLMLLWSWWSLLGALGDPQTHLINKGCSQYDATDLSNFNQILNETLDDLRAQVSNQSKHFATAQKARGADPVYAMFQCRNYLSTADCAACFVVAAAQIRNCSVGANGARVIYDGCFLRYESNGFFDQTTLAGNSMICGNQTTVGATPSFNTTAQQVLMDLKIATPKITGFFAATKTQLAGGGAIYAIAQCAETATESACLDCLTVGYNNIHMCLPNTDGRAFDAGCFMRYSETAFFADNQTIDIAPFLKQGGSSNKKGAIIGGVVGGVGLVVILLALFGLLRRYKKPKRVPIGDILGATELKGPVSYRYKDLKTATKNFNDENKLGEGGFGDVYKGTLKNGKIVAVKKLILGQSGKMDEQFESEVKLISNVHHKNLVRLLGCCSKGQERILVYEYMANKSLDRFLFAGENKGSLNWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDEMQPRIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSFGVVVLEIVSGQKSSELRADADGEFLLQRAWKLHVQDMHLDLVDKTLLDPEDYDAEEVKKIIEIALLCTQASAAARPTMSEIVAFLKCKNSLGQIRPSMPVFVESNFRTRAETSTSTGSSTSNATASISMLSAR 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02080 654 Coils Coil 53 73 - -
Gma11g02080 654 ProSiteProfiles Gnk2-homologous domain profile. 145 249 IPR002902 -
Gma11g02080 654 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 27 651 - -
Gma11g02080 654 Gene3D Transferase(Phosphotransferase) domain 1 410 616 - -
Gma11g02080 654 Gene3D - 146 249 IPR038408 -
Gma11g02080 654 Gene3D - 33 138 IPR038408 -
Gma11g02080 654 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 651 - -
Gma11g02080 654 ProSitePatterns Protein kinases ATP-binding region signature. 339 362 IPR017441 GO:0005524
Gma11g02080 654 SUPERFAMILY Protein kinase-like (PK-like) 317 624 IPR011009 -
Gma11g02080 654 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Gma11g02080 654 ProSiteProfiles Gnk2-homologous domain profile. 34 138 IPR002902 -
Gma11g02080 654 Pfam Salt stress response/antifungal 41 135 IPR002902 -
Gma11g02080 654 Pfam Salt stress response/antifungal 151 246 IPR002902 -
Gma11g02080 654 Pfam Protein kinase domain 333 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02080 654 ProSiteProfiles Protein kinase domain profile. 333 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02080 654 CDD STKc_IRAK 339 607 - -
Gma11g02080 654 SMART serkin_6 333 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g02080 654 Gene3D Phosphorylase Kinase; domain 1 309 409 - -
Gma11g02080 654 MobiDBLite consensus disorder prediction 632 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02080 Gma-Chr11 34803175 34809294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02080 10 654 Receptor kinase-like Gene Family AT1G70520 35.758 8.20e-123 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gma11g02080 Pkinase 4.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02080 - - gmx:100811953 1206.43