Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02076 ATGAAGCTTTCAACATCAGGGTTGGGGCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCAACAACTAATAGAGAAATTGATGGACATATTCCCAATTATCCTAGCTTGCCACCCCAGTTGATTTGCCAACTTCACAATATTACAATGCATGCAGATGTTGAAACGGATGAAGTATATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTCCTATGGAATTGGGCATTCCTAGTAAGCAGCCATCAAATTATTTTTGCAAGACGTTAACAGCCAGCGACACCAGCACACATGGGGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCGCAGCAACCGCCGGCACAGGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAATTTCGACATATTTTTCGAGGTAGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAACTTCTTTTGGGAATACGTCGTGCCAATCGACCGCAAACTGTAATGCCGTCATCTGTTCTATCCAGTGATAGCATGCATATTGGACTTCTTGCAGCCGCTGCCCATGCTGCAGCAACCAATAGCTGTTTTACCGTATTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTAGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCGATGTATCCGTCATTATTTCCCCTCAGACTGAAGCGTCCATGGCATCCTGGCACCTCATCTTTGCATGATGGGAGAGATGAAGCTACTAACGGGTTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGCTGGCGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTACAGAACTTAGGTAGTGGATATCTCATGAAGCAACAATTGATGAATTTTCAGCAGCCTTACCACTATCTTCAACAATCTGGAAACAGTAATTCTCCTTTGCAACTTCAGCAGCAGCAACCAATTCAACAATCCGTGTCTTCTAACATGCTGCAGCCACAAACACATGTACTGACAGAGAACCTATCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGAAGTCCAGGCACAACAGCAGCAACATACTTATCAAGACTCGCTCTCAATTCTGGGTGATCAGCTCCATCAGAGACAACACTCTGGCATTCCTTCATCATCATATTCAAAACCGGATTTCTTGGATTCGAGCATGAAGTTCCCTGCTTCAGTTTCCCCTGGGCAAAACATGCTTAGTTCACTTTGTCCCGAAGGAAGTGGCAGTCTCTTGAATTTATCCAGGAGTGGTCAGTCCTTGCTGACCGAACAGTTACCCCAACAGCAATGGACTCAAAAATATGCACCTGTGCAGGTCAATGCCTATGGAAGCACTGTGTCACATCCACAATATTCCGGAAAAGATTCTGTAATGGTGCTACCACATTGTAACTCAGATGCCCAAAATTCTACTCTTTTTGGTGTCAATATCGATTCATCTGGCCTTCTCCTCCCCACCACCGTCCCTGGTTACACCACCTCGTCCGCTGACACTAATTCATCAACAATGCCATTAGCGGAGTCTGGTTTCCAGGGTTCTCTATATGGTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCATACTGACCCAGAAAACCAGACTCAAACCTTTGTCAAGGTTTACAAATCAGGGTCAGTTGGACGCTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGTGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGATGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGATCAAGCGGTAGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTAAACGGCACTGGTGCTGAGTCTCAGGACATTGTTTCTGGACCACCATCAATCGGCTCACTTGAGTACTGA 2538 0.4574 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNITMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGRQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGRDEATNGLMWLRGGPVDQGLNSLNFQGAGGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMKQQLMNFQQPYHYLQQSGNSNSPLQLQQQQPIQQSVSSNMLQPQTHVLTENLSQHLLQKPHNNQEVQAQQQQHTYQDSLSILGDQLHQRQHSGIPSSSYSKPDFLDSSMKFPASVSPGQNMLSSLCPEGSGSLLNLSRSGQSLLTEQLPQQQWTQKYAPVQVNAYGSTVSHPQYSGKDSVMVLPHCNSDAQNSTLFGVNIDSSGLLLPTTVPGYTTSSADTNSSTMPLAESGFQGSLYGCMQDSSELLQSAGHTDPENQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGDQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02076 845 SUPERFAMILY CAD & PB1 domains 712 793 - -
Gma11g02076 845 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma11g02076 845 CDD B3_DNA 127 229 IPR003340 GO:0003677
Gma11g02076 845 Pfam B3 DNA binding domain 128 230 IPR003340 GO:0003677
Gma11g02076 845 SMART B3_2 128 231 IPR003340 GO:0003677
Gma11g02076 845 Pfam AUX/IAA family 715 803 IPR033389 -
Gma11g02076 845 SUPERFAMILY DNA-binding pseudobarrel domain 112 258 IPR015300 -
Gma11g02076 845 PANTHER AUXIN RESPONSE FACTOR 1 830 - -
Gma11g02076 845 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 830 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma11g02076 845 Gene3D - 126 230 IPR015300 -
Gma11g02076 845 ProSiteProfiles PB1 domain profile. 719 803 IPR000270 GO:0005515
Gma11g02076 845 Gene3D - 293 365 - -
Gma11g02076 845 MobiDBLite consensus disorder prediction 823 837 - -
Gma11g02076 845 Gene3D - 715 808 - -
Gma11g02076 845 ProSiteProfiles B3 DNA-binding domain profile. 128 231 IPR003340 GO:0003677
Gma11g02076 845 MobiDBLite consensus disorder prediction 823 845 - -
Gma11g02076 845 MobiDBLite consensus disorder prediction 472 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02076 Gma-Chr11 34761811 34768509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02076 98 811 B3 DNA Binding Superfamily AT5G37020 68.923 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma11g02076 AUX_IAA 5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02076 - - gmx:100784373 1657.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00436 18 4138607 4145527 Gma11g02076 11 34761811 34768509 GST
Gma11g02076 11 34761811 34768509 Gma14g02038 14 51498662 51505927 PCT
Gma11g02076 11 34761811 34768509 Gma02g02264 02 48725969 48736520 PCT
Gma14g02038 14 51498662 51505927 Gma11g02076 11 34761811 34768509 PCT
Gma02g02264 02 48725969 48736520 Gma11g02076 11 34761811 34768509 PCT