Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02030 ATGAGTGACACACACCAACCTTTCATGTCCGTACAACCACCCATGAAGCTCCACAACCACCCATTTAACCCACAAGCCTCAAGCTCAAATTTTGACGGCGACCCACCATGCAAAACCGCCGGAAAAACAAAACCACCTCACACGAAGCTCCTCCGGGTCATTCTCACCGACCACGACGCCACCGATTCTGACTCCTCCGGCGACGACGAAGACCCAAAAAACACAAAAAAACACAAAAAGGTGAAAAGACAAATTACCCACATCACCATAAACCTTCCCTTTTTCTCAAAATCCCCAACTCCAACATCAACACCTTCTTCTTCTTCGCTTGACCCGACCCGTTCGACCCGACCCAAGAAACGACTCGGCGTCCCTCGCCGCCGGAACAAGTTCCGCGGCGTCCGGCAGCGACCATGGGGACGGTGGACGGCAGAAATCCGTGACCCGACTCAGAGAAAACGGGTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCCGCCGTGTACGACGAGGCCGCGGTGAAGCTCAAGGGCCCTAACGCCGTCACCAACTTCCCCCTCTCCGCCGCCGGAAACACGGAACATGATACCCCTCCGCCGGAGACGGTGTTCTCCGGCGAAGGTCTTTCATCTCCGACGTCCGTTCTCACTTACTGCGACGGAGACTCGACGCCGTTCGACGGTTTTCGTTACGGCGAGGTCGACGCGTTCGGGTTTGAGTTTGACATCGACGCGCCGTTTAGTTTAACGGCCGTTAACTTAGGGGTGCTGAGTCAGCGGTTCGGGAAGGAAGAGTTTGGCGAGTTTGACCCGAACGAGTTCTTGACGTGGCCGAGTTAA 843 0.5635 MSDTHQPFMSVQPPMKLHNHPFNPQASSSNFDGDPPCKTAGKTKPPHTKLLRVILTDHDATDSDSSGDDEDPKNTKKHKKVKRQITHITINLPFFSKSPTPTSTPSSSSLDPTRSTRPKKRLGVPRRRNKFRGVRQRPWGRWTAEIRDPTQRKRVWLGTFDTAEEAAAVYDEAAVKLKGPNAVTNFPLSAAGNTEHDTPPPETVFSGEGLSSPTSVLTYCDGDSTPFDGFRYGEVDAFGFEFDIDAPFSLTAVNLGVLSQRFGKEEFGEFDPNEFLTWPS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02030 280 PIRSF PTI6 23 280 IPR017392 GO:0003700
Gma11g02030 280 MobiDBLite consensus disorder prediction 190 209 - -
Gma11g02030 280 MobiDBLite consensus disorder prediction 51 76 - -
Gma11g02030 280 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Gma11g02030 280 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Gma11g02030 280 MobiDBLite consensus disorder prediction 89 113 - -
Gma11g02030 280 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Gma11g02030 280 SUPERFAMILY DNA-binding domain 130 189 IPR016177 GO:0003677
Gma11g02030 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 46 221 - -
Gma11g02030 280 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Gma11g02030 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 46 221 - -
Gma11g02030 280 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Gma11g02030 280 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Gma11g02030 280 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Gma11g02030 280 MobiDBLite consensus disorder prediction 1 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02030 Gma-Chr11 34089788 34091311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02030 49 219 AP2-EREBP Transcription Factor Family AT4G27950 42.857 8.36e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma11g02030 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02030 K13434 - gmx:100794593 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g02030 11 34089788 34091311 Gma11g02030 11 34089788 34091311 ECH
Gma18g00480 18 4480588 4481660 Gma11g02030 11 34089788 34091311 GST
Gma11g02030 11 34089788 34091311 Gma14g02014 14 51158193 51160033 PCT
Gma11g02030 11 34089788 34091311 Gma02g02234 02 48391737 48392585 PCT
Gma14g02014 14 51158193 51160033 Gma11g02030 11 34089788 34091311 PCT
Gma02g02234 02 48391737 48392585 Gma11g02030 11 34089788 34091311 PCT