Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02028 ATGTCGTATGTGCCTCCGCACCTCAGAAACCCGAGTTCCACCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACCACCACCACCACCACCACAAGCTCGCATTCGCCTCCAACACCACCACCAATTGCTCTCCATCTCTCTCCTCCTTCCACAACAATGCCTCTCGCCGGAGCTCCGCCGCGCCTCCCTCGCCGCGGATTCTCGCCAACCCCGACACCATCTTCCCCCAATGGCAACCCTCCGAACGCGTTTCCCGCATGACTCCGGAACAGATTGAAGAGGTCCGGTCCAGGCTTAATCTTGATGTTGCTGTCGCATCTGACTCTCCTCCTGCACCTGCTCCAATAGAATCGTTTACTGATATGTGTTTGCATCCGAGTATCATGAAGGACATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACCGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACATCCCATTCGGCGCAATGATGGTCCCCTGGCATTAGTTTTGGCTCCTACGAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTTGAGTCATTAAAAACTGCCATAGTTGTGGGCGGAACCAACATTGAAAAGCAGAGGTCTGAACTAAGAGCTGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGATTCATTGATCATTTACAACAAGGCAACACTTCCCTCTCCAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGAATTATCAAAAGAGTACTTAGCTAACCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAGAAGATTGATCGGCTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCCGAAAAATGTGGTCATCCATGTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAAGCTGCCTTGCATGATTTTCGGAGTGGCTCCACCAACATTTTGGTTGCCACTGATGTCGCGTCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATTAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTAGCTACTTCATTTTACACTGATCGCGACATGTTCCTCGTGGCAAATATAAGGAAAGCAATAGCTGATGCAGAATCTGGGAACACACTGACATTTGCAACCGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATGAACATTGAAGATAAATATAAATTCATGATTACTGCCACAAACACTAAAAAAGAGGGAGCAGCAGATAGTGCCTGGGATGATTAA 1698 0.4682 MSYVPPHLRNPSSTTVATARTPSVTLDNHHHHHHKLAFASNTTTNCSPSLSSFHNNASRRSSAAPPSPRILANPDTIFPQWQPSERVSRMTPEQIEEVRSRLNLDVAVASDSPPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQHPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEELSKEYLANPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEEASQAEKCGHPCPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASMNIEDKYKFMITATNTKKEGAADSAWDD 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02028 565 Coils Coil 206 226 - -
Gma11g02028 565 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 327 IPR014001 -
Gma11g02028 565 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 273 281 IPR000629 -
Gma11g02028 565 CDD DEADc 131 328 - -
Gma11g02028 565 Gene3D - 80 331 IPR027417 -
Gma11g02028 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 488 IPR027417 -
Gma11g02028 565 Gene3D - 333 527 IPR027417 -
Gma11g02028 565 Pfam Helicase conserved C-terminal domain 351 468 IPR001650 -
Gma11g02028 565 SMART ultradead3 139 342 IPR014001 -
Gma11g02028 565 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 19 530 - -
Gma11g02028 565 Coils Coil 509 529 - -
Gma11g02028 565 CDD SF2_C_DEAD 339 477 - -
Gma11g02028 565 MobiDBLite consensus disorder prediction 50 76 - -
Gma11g02028 565 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Gma11g02028 565 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 530 - -
Gma11g02028 565 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 509 IPR001650 -
Gma11g02028 565 SMART helicmild6 387 468 IPR001650 -
Gma11g02028 565 Pfam DEAD/DEAH box helicase 144 315 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02028 Gma-Chr11 34041844 34053504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02028 120 490 Eukaryotic Initiation Factors Gene Family AT1G72730 35.733 3.64e-71 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02028 K12823 - gmx:100818387 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g02028 11 34041844 34053504 Gma11g02028 11 34041844 34053504 ECH
Gma18g00482 18 4501945 4511372 Gma11g02028 11 34041844 34053504 GST