Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01997 ATGCCCAGAACAAAGGTGAAAATCGCCTTCATAACCAACGATGCTGCGAGGAGGGCAGCATACAGGAAAAGGAAGAAGGGAATTCTGAAGAAGATGGAGGAACTCAGCACCCTTTGTGGAATTGAAGCATGTGCTATAGCATATAGCCCCTATGATCCCGAGCCAGTGATTTGGCCATCCGAATTGGGTGTCCATCATGTGCTGGGAAAATTCAGGACCATGTCTGAATGGGAGAAGAACAAGAAGATGGCGAACCAGGAGAGCTTCCTAGGGCATATGATCGCGAAGCACAAGGAGCAGCTGAAGAAACTCGTGAAGGAAAACAAGGAGAAGGAGATGACCGTGTTCATGCATCAATGCCTTGATGAAGGGAGGGTTCTGCCAGATAACAACTTGACGGCAGACGATTTGAACGATCTTTCGTCGATCATCGAACAGAACCTGAAGGATGTTTGTAGAAGGTTGGAAACGCTGAATGTTATGGAGAAGACACCACCACACCAACAACCCCCCCAGATCCAATCATCACCAGTGTTGGATATGAGTGCTAACCATGATCAAAAGCAGAAGAAGTTTATGGATTTGCTTAATGGTAATGAGGATGAGACAACAACAGTGCCTCCATTTGAATCAGATGCTAATCTCCAACTCCAAATTGGGTTTTAG 666 0.461 MPRTKVKIAFITNDAARRAAYRKRKKGILKKMEELSTLCGIEACAIAYSPYDPEPVIWPSELGVHHVLGKFRTMSEWEKNKKMANQESFLGHMIAKHKEQLKKLVKENKEKEMTVFMHQCLDEGRVLPDNNLTADDLNDLSSIIEQNLKDVCRRLETLNVMEKTPPHQQPPQIQSSPVLDMSANHDQKQKKFMDLLNGNEDETTTVPPFESDANLQLQIGF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01997 221 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Gma11g01997 221 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
Gma11g01997 221 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma11g01997 221 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 174 - -
Gma11g01997 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma11g01997 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma11g01997 221 Coils Coil 94 114 - -
Gma11g01997 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gma11g01997 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma11g01997 221 PANTHER MADS BOX PROTEIN 3 174 - -
Gma11g01997 221 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01997 Gma-Chr11 33106333 33106998 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01997 1 158 Type I MADS-box Gene Family AT5G48670 53.165 4.16e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma11g01997 SRF-TF 9.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01997 - - gmx:100816242 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00494 18 4615383 4616186 Gma11g01997 11 33106333 33106998 GST