Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01995 ATGGCCCCGGGAAAGCTGAAACTCACATTCATAGGCAACGATTTTAAAAGAAAAAACGTATGCAAGAAACGGAAGCAGTCACTGCTGAAGAAGACAGAGGAACTCAGCATGCTTTGTGGCGTTGAAGCATGTGCTATAGTGTATGGCCCCAATGATCCTCGGCCAGTGATTTGGCCATCCGAATTGGGTGTCGAAAATGTGCTGCGAAAGTTCATGAGCATGCCACAATTGGAGCAAAGCAAAAAGATGGTGAACCAAGAGAGTTTCATTGCACAAAGAATCATGAAGAGTAAAGAAAAGTTGCAGAAAATTGTGAAGGAAAACAAGGAGATTGAAATGTCCTTGTTCATGGCTCATTGCTTTAAGACAGGAATGTTTCAGCCTGATATCAATATGACCACAGCTGATATGAATGTTCTTTCATCGATAATTGAACAGAACCTGAAAGACATTGATAAAAGGATGGAAATGCTGAAAGCCAACCAGCAGTTCAATGGTAATGGGTATGAGACAACAATGCCTGCATTTGGTGGTGCTAACTTCCCTCTCTAA 552 0.4185 MAPGKLKLTFIGNDFKRKNVCKKRKQSLLKKTEELSMLCGVEACAIVYGPNDPRPVIWPSELGVENVLRKFMSMPQLEQSKKMVNQESFIAQRIMKSKEKLQKIVKENKEIEMSLFMAHCFKTGMFQPDINMTTADMNVLSSIIEQNLKDIDKRMEMLKANQQFNGNGYETTMPAFGGANFPL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01995 183 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 2 156 - -
Gma11g01995 183 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma11g01995 183 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Gma11g01995 183 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Gma11g01995 183 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Gma11g01995 183 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gma11g01995 183 PANTHER MADS BOX PROTEIN 2 156 - -
Gma11g01995 183 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01995 Gma-Chr11 33092917 33093828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01995 1 183 Type I MADS-box Gene Family AT5G48670 42.077 7.58e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma11g01995 SRF-TF 7.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01995 - - gmx:100814653 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00621 18 6106432 6115150 Gma11g01995 11 33092917 33093828 GST
Gma18g00498 18 4643267 4644253 Gma11g01995 11 33092917 33093828 GST
Gma14g01900 14 49648446 49654358 Gma11g01995 11 33092917 33093828 PCT
Gma02g02123 02 47057180 47062044 Gma11g01995 11 33092917 33093828 PCT