Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01985 ATGCAAACAGAAGCAAAGCAACAAAAATTGTTGAAGGGTAAATCCCCCCTTGATCATGATCCCGGTGAAGCAAAGAAGAGTGATCAACCCTCACAATTCCTTTGTGGTTTATGTTTTAATGACAAACCAGTGTCTCAAATGTTCAAAGAAGGTAAGTGTAACCACCCCTTTTGTACTCACTGCATATCCAAACACGTGGCTACTCAGATGCACCAAAACATTCTCAAGGTGATGTGTCCAAACCCTAACTGTCCCGTGGAATTGAAGCCCGAATATTTTCACAACATTTTGGCCAGTGAAGTCATTGTTAGATGGGAAACCGTGAGGTGTGAGTCTTTGATTGTTGGGTTGGAGAAGACCTACTGTCCCTTCAAGGACTGTTCTGTTTTGTTGGTGAATGATGGAGAAAAAGATGTGATCAGTGCTGAGTGCCCCTCTTGTCATAGGCTATTTTGCGCACGGTGTAAGGTTCCTTGGCATGGAATTATGAGTTGTGAAGAATTCCAAGAGATAGAAAGGAGCAAAGATGAAATAGTGTTGAAAAACTAA 549 0.4189 MQTEAKQQKLLKGKSPLDHDPGEAKKSDQPSQFLCGLCFNDKPVSQMFKEGKCNHPFCTHCISKHVATQMHQNILKVMCPNPNCPVELKPEYFHNILASEVIVRWETVRCESLIVGLEKTYCPFKDCSVLLVNDGEKDVISAECPSCHRLFCARCKVPWHGIMSCEEFQEIERSKDEIVLKN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01985 182 ProSiteProfiles TRIAD supradomain profile. 31 182 IPR044066 -
Gma11g01985 182 SUPERFAMILY RING/U-box 114 170 - -
Gma11g01985 182 SMART ibrneu5 103 165 IPR002867 -
Gma11g01985 182 Pfam IBR domain, a half RING-finger domain 118 165 IPR002867 -
Gma11g01985 182 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 17 173 - -
Gma11g01985 182 ProSiteProfiles Zinc finger RING-type profile. 35 80 IPR001841 -
Gma11g01985 182 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 17 173 IPR031127 GO:0004842|GO:0016567
Gma11g01985 182 SUPERFAMILY RING/U-box 30 112 - -
Gma11g01985 182 MobiDBLite consensus disorder prediction 11 26 - -
Gma11g01985 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 114 IPR013083 -
Gma11g01985 182 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Gma11g01985 182 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01985 Gma-Chr11 31002297 31002845 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01985 35 172 C3H Transcription Factor Family AT2G19610 26.000 8.99e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01985 K11975 - gmx:102662752 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00607 18 5951537 5952322 Gma11g01985 11 31002297 31002845 GST