Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01980 ATGCATTTAGTTTCACTCTCACTCATGACTTCTAAAACTCAGCATTGCGTTATCCGTGGCCATCACAAGTCCACACATTTCAATGGTATCTGTGCCTCCTGTCTTCGGGAACGCCTCGCCGCCATCGCTTCCTCCTCCTCTGCCACGCCGGAGCTCGACCTCACCATCAAGTCGTCTTTCCCCTTTGACCCCTTGGGGCTCGAAACGCCACGGTGCTCGCCGCGAAGACAGAAGAAAAAGTCCCTCCTTGATCATGATGACAGTGGTGAAGATCAACCCTCATTTTTCCTTTGTGACATATGTTTTGATGACAAACCAGTGTCTGACATGTTCGAAGAGGGTAAGTGTAACCACCTCTTTTGCACTCACTGCATGTCAAAATACGTGACTACTCAAATACAACAAAACATTCTCAAGGTGATCATGTGTCCAAACGCTAATTGCTCCGTGGAATTGAAGCCCGAATATTTTCACAACATTTTGGCCAGTGAAGTCATTGTTAGATGGGAAACTGTGATGTGCGAATCCATGATTGTTGAGTTGGAGAAGACTTACTGCCCCTTCAAGGACTGTTCAGTTCTGTTGGTGAACGATGGAGAAAAGGTTGTGACCAGTGCTGAGTGCCCCTCTTGTCATAGGCTATTTTGCGCACAGTGTAAGGTTCCTTGGCATGGAAGTATGAGTTGTGAAGAATTCCAAGAGATAGAAAGGAACAAAGATGAAAAAGTGTTGGAAAACAAGTTCTTCAAGCTGGCTAAAGAGGAAAAATGGCAGAAATGTCCCCGGTGCACTATGTTTGTCCAGAGACGTGAGGGATGTGATCACATGACTTGCAGAAAAGATGCTTTCTACGTCGCGGCAACTACATCGATTCTGGAAAACCGCTTTAGTAGAAGACGCAGTGACAATTTTGTAAATAGGTGA 924 0.4567 MHLVSLSLMTSKTQHCVIRGHHKSTHFNGICASCLRERLAAIASSSSATPELDLTIKSSFPFDPLGLETPRCSPRRQKKKSLLDHDDSGEDQPSFFLCDICFDDKPVSDMFEEGKCNHLFCTHCMSKYVTTQIQQNILKVIMCPNANCSVELKPEYFHNILASEVIVRWETVMCESMIVELEKTYCPFKDCSVLLVNDGEKVVTSAECPSCHRLFCAQCKVPWHGSMSCEEFQEIERNKDEKVLENKFFKLAKEEKWQKCPRCTMFVQRREGCDHMTCRKDAFYVAATTSILENRFSRRRSDNFVNR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01980 307 MobiDBLite consensus disorder prediction 72 88 - -
Gma11g01980 307 ProSiteProfiles Zinc finger RING-type profile. 98 144 IPR001841 -
Gma11g01980 307 SUPERFAMILY RING/U-box 175 234 - -
Gma11g01980 307 ProSitePatterns Zinc finger RING-type signature. 116 125 IPR017907 -
Gma11g01980 307 Gene3D - 227 283 - -
Gma11g01980 307 SUPERFAMILY RING/U-box 93 176 - -
Gma11g01980 307 MobiDBLite consensus disorder prediction 67 88 - -
Gma11g01980 307 SUPERFAMILY RING/U-box 249 278 - -
Gma11g01980 307 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 85 285 - -
Gma11g01980 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 180 IPR013083 -
Gma11g01980 307 ProSiteProfiles TRIAD supradomain profile. 94 307 IPR044066 -
Gma11g01980 307 SMART ibrneu5 167 229 IPR002867 -
Gma11g01980 307 Pfam IBR domain, a half RING-finger domain 170 229 IPR002867 -
Gma11g01980 307 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 85 285 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01980 Gma-Chr11 30761636 30763119 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01980 90 279 C3H Transcription Factor Family AT2G19610 28.713 8.19e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01980 K11975 - gmx:102663173 595.119