LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma11g01952	ATGGTTGGACCTAACTTCATGGATGAGATAGACTGTGGCAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCCGTCAAGGACGTCGACGGCGGCGCCGCCACCTTGCCTTCCGTCGCCGCTAATATTGTCAAGGAGCTCTCAGATTTCATCCTTAAACGCCTCGACCATAAAAGTCCCATCGTCAAACACAAGACTTTACGATTGATCAAATATGCGGTTGGAAAGTGTGGTGTGGAGTTTAGAAGGGAAATGCAGAGACATTCGGTGGCAATTCGTCAGTTGTTACACTACAAGGGTCAATCGGATCCTGTCAAAGGCGATGCATTCAACAAGGCTATGAGAGACACTGCTCAAGAGGCCATCTCTGCCATTTTTTCTGCAGATGATACCAATAAGCAACCTCTTCCGGCTCCTGCTGCTGCTGCTGGTCTCAATAGACGGATAGAAGGGTTTGGGAACACGAATTTCCAAGCGCCTTCTCAGGATAATAAGAAATCGTTTCTCGGTGAGGTGGTTGATATTGGAAATGCAACCACTAAGCAAGGACTCAGTGCCTTCACACAAGGCCATTCTTCTCTCATCAAGAATGAGGCTGGGACTGGAACCTACAAGGGCCCCAACAATCTTCCTGCCTCATTTATGACAGCAACAGAAAGTGGAGACAGGTGTAGCGGCGAAACTGAGGTCGTAGAAAGAATGGCGAAAACGACGTCGTTGTTGCTCTTTACACTGCTCCTCTTCGGAACCTTAGCTCTCATCCAGGCGAAGAAATCGAAGGAGGATTTGAAGGAAGTGACCCACAAGGTTTACTTTGATGTTGAGATTAATGGAAAAGAAGCAGGTCGTATTGTGATGGGTCTTTTTGGAAAGGCTGTTCCAAAAACTGCAGGTTGGATTTTCGTAGTCTCTATTTTAATTCTTATTAATTGGGAAAAGGGAACTGGTAAAAGTGGCAAGCCTCTCCATTACAAAGGTAGCTCATTCCATAGAATTATTCCTAGCTTTATGCTCCAAGGAGGTGATTTTACACATGGCAATGGTATGGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGATGAGAACTTCAAGTTAAAGCATACTGGACCAGGACTTCTATCAATGGCAAATGCTGGTCCTGACACCAATGGCTCACAATTTTTCATTACAACCGTGACAACTAGCTGGTTGGACGGAAGGCATGTTGTTTTTGGTAGAGTTCTTTCTGGATTGGATGTTGTTTACAATATTGAAGCTGAAGGAACACAAAGTGGCACTCCCAAGAGCAAGgggagcagatga	1308	0.4488	MVGPNFMDEIDCGSFFDHIDDLLDFPVKDVDGGAATLPSVAANIVKELSDFILKRLDHKSPIVKHKTLRLIKYAVGKCGVEFRREMQRHSVAIRQLLHYKGQSDPVKGDAFNKAMRDTAQEAISAIFSADDTNKQPLPAPAAAAGLNRRIEGFGNTNFQAPSQDNKKSFLGEVVDIGNATTKQGLSAFTQGHSSLIKNEAGTGTYKGPNNLPASFMTATESGDRCSGETEVVERMAKTTSLLLFTLLLFGTLALIQAKKSKEDLKEVTHKVYFDVEINGKEAGRIVMGLFGKAVPKTAGWIFVVSILILINWEKGTGKSGKPLHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGRVLSGLDVVYNIEAEGTQSGTPKSKGSR	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma11g01952	435	CDD	ENTH_like_Tepsin	44	128	IPR035802	-
	Gma11g01952	435	SUPERFAMILY	Cyclophilin-like	267	431	IPR029000	-
	Gma11g01952	435	Gene3D	-	34	136	IPR008942	-
	Gma11g01952	435	Gene3D	-	256	433	IPR029000	-
	Gma11g01952	435	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	246	432	-	-
	Gma11g01952	435	SMART	VHS_2	28	145	IPR002014	GO:0035091\|GO:0043130
	Gma11g01952	435	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	273	430	IPR002130	GO:0000413\|GO:0003755
	Gma11g01952	435	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	325	342	IPR020892	GO:0003755\|GO:0006457
	Gma11g01952	435	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	272	435	IPR002130	GO:0000413\|GO:0003755
	Gma11g01952	435	SUPERFAMILY	ENTH/VHS domain	46	103	IPR008942	-
	Gma11g01952	435	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	388	400	IPR002130	GO:0000413\|GO:0003755
	Gma11g01952	435	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	373	388	IPR002130	GO:0000413\|GO:0003755
	Gma11g01952	435	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	401	416	IPR002130	GO:0000413\|GO:0003755
	Gma11g01952	435	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	289	304	IPR002130	GO:0000413\|GO:0003755
	Gma11g01952	435	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	330	342	IPR002130	GO:0000413\|GO:0003755
	Gma11g01952	435	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1	246	432	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma11g01952	Gma-Chr11	25148228	25162043	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma11g01952	324	420	U-box Gene Family	AT5G67530	53.061	1.80e-23	101

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma11g01952	K01802		-	gmx:102670419	442.965

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma11g01952	11	25148228	25162043	Gma11g01952	11	25148228	25162043	ECH
	Gma18g00591	18	5824198	5826855	Gma11g01952	11	25148228	25162043	GST