Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01949 ATGACACCACCCTTTACTCTCTCCCTCTCCCTCTTCTCCATCCTCGCCGTCACCGCCGTCCACGGCCTGGGCTCCGCTGCCACCACCGCCGTCACCTACGGCACCGCCACCGTGTGCGGCATCGTCGCTGGGGAGCCCCAGCACCGCATCCAGTGCTCCCGCAACGGCAGCCGCGTCGTTCCTCTCACCCTCCCCAACGCCTCCTTCGACGCCATCTCCGGCGGCCGGAGCTTCTTCTGCGGCCTCCGCTCCGGTGGCCGCAGCCTCCACTGCTGGGACACCGCCGCCACAACTGCCTCCTTCCGCCCAAAGAGAGTCTTCCACAGCGACGTGGTGCAGTTGGCTGACGTGGCAGTTGGCGACTCCCAGGTCTGCGCGAGAGAGGTGCAATCCGGTGTGGTACGGTGCTGGAGAGGAAGCGGTGGGGCCCAGTTCAGTTCCCCTTCGGAGAGTTTAAGGTTTCGGAGCATCACATGTGGCTGTGGTTTTTCATGTGGGATAGTAAAAGAGAGTGGAAGAGTTGTGTGTTGGGGTGATGATAACGAGGGTGCAAATAGAAAAGGTCTTGCTTTGGGAGAAGATTTCACGTGTGGAATTAGGACTAGGAACGGTGTTGTTGTGTGTTGGGGTGGTGGTTTTGATAGTAATGTGGTGAAAGGTGTTTCTTTTGAGTCACTTGTTGCTGGTTTGGATTACGTGTGTGGGTTAACAACTAGGAATTTGACAGTGGTGTGTTGGGGTAAAGGTAGGTTTTTTCATCATGTGCCTAGTGAGGTTCCATTGGGTGTGATTCTTCCAGGTCCATGTGTTGAAGGTGCTTGTAGTGGTTCTTGTGGTACATATCCTGATTCTGGTGCTCTTTGTCATGGCTCTGGGAGTATTTGTTACTCTTGTCAAACTGAGATCCCACTAGCTGTTCCATTGCTTCCACCATCATCATCAACAACAACACAAGCTGTTCCAAATCAAGAACAACCTTCTTCACGTGGAGGGAAAAACAAAAACTTGAAGGAGTTTTTGGTTTTTTTTATTGTTGGATCAGTTGGTGCTTTTGTGGGGTTATGCACTATTCTCTATTTCATTTGGATTTGTGCAAGGAGGTTTTTGTTGAGGAGAAAAGAAGTAGTAGTAGGAGGAGGTAATAATAATTCTGTGAAGCCTACTAGCTCAGAGAGTGATGCATATGTGGATATAATCCCCATGCCTAATTTTGGTTCCAATGGAACAACATTCAGAACATTTTCTAGCAAAAGTCGGGGATCAAGAAGATTGGGGAGGCATAGGAGTGGTTCATCGTCGAAGCGTGTGGACAGAACCGAGAGTTTCTCATTGTCTGAACTTGCAACAGCCACTGAAAACTTCTCATTGTGTAATAAAATAGGTGCTGGTAGCTTTGGAAGTGTTTACAAAGGCATGCTACGAGATGGTCGTGAAGTTGCAATTAAGAGAGGAGATAGTACTAGTACCATGAAGAAGAAATTTCAGGAGAAAGAGATTGCTTTTGATTCAGAATTGACCATGCTGTCACGGCTTCACCACAAGCACTTGGTGAGGCTAATTGGGTTCTGTGAGGAGAATGATGAGAGGCTCTTGGTCTATGAGTACATGAGCAATGGTTCACTTTATGACCACTTGCATGACAAGAACAATGTTGACAAGAGTAGCAGCATTTTGAATTCTTGGAGGATGAGGATCAAGATTGCATTGGATGCTGCTAGGGGAATTGAATACATTCACAACTATGCAGTTCCACCCATTATCCACAGGGACATCAAGTCCTCAAATATACTCTTGGATTCAAACTGGAATGCTAGAGTTTCTGACTTTGGATTGTCAAAAATTTGGCATGAGACTGAACAAGAATTGATGTCCACCACCAAAGCAGTTGGAACTGTTGGATACATAGACCCTGAGTACTATGTGTTGAATGTGTTAACCACAAAGAGTGATGTGTATGGTTTAGGAGTGGTGATGTTGGAGCTTCTCACAGGGAAAAGAGCAGTGTTCAAACCTGAAGATGGATCAGGCCCTATGGGGGTGGTGGAATACACAGGGCCAAAGATTGCATCAGGAGAGCTTTGGAGTGTGTTGGATTATAGAGTTGGTCATCCAGAAGTGAATGAGGTTGAGTCCATTCAAATCATGGCTTACACTGCTATGCATTGTGTGAACTTGGAGGGAAAAGAGAGGCCTGAAATGACTGACATTGTTGCTAACTTGGAGAGAGCATTGGCTTTCATTGAGGGCACCCCTACTAGCCTCTCCTTTGCTTCATTCTCTGCCCCTCTTGAATAA 2295 0.4754 MTPPFTLSLSLFSILAVTAVHGLGSAATTAVTYGTATVCGIVAGEPQHRIQCSRNGSRVVPLTLPNASFDAISGGRSFFCGLRSGGRSLHCWDTAATTASFRPKRVFHSDVVQLADVAVGDSQVCAREVQSGVVRCWRGSGGAQFSSPSESLRFRSITCGCGFSCGIVKESGRVVCWGDDNEGANRKGLALGEDFTCGIRTRNGVVVCWGGGFDSNVVKGVSFESLVAGLDYVCGLTTRNLTVVCWGKGRFFHHVPSEVPLGVILPGPCVEGACSGSCGTYPDSGALCHGSGSICYSCQTEIPLAVPLLPPSSSTTTQAVPNQEQPSSRGGKNKNLKEFLVFFIVGSVGAFVGLCTILYFIWICARRFLLRRKEVVVGGGNNNSVKPTSSESDAYVDIIPMPNFGSNGTTFRTFSSKSRGSRRLGRHRSGSSSKRVDRTESFSLSELATATENFSLCNKIGAGSFGSVYKGMLRDGREVAIKRGDSTSTMKKKFQEKEIAFDSELTMLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLYDHLHDKNNVDKSSSILNSWRMRIKIALDAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSKIWHETEQELMSTTKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKPEDGSGPMGVVEYTGPKIASGELWSVLDYRVGHPEVNEVESIQIMAYTAMHCVNLEGKERPEMTDIVANLERALAFIEGTPTSLSFASFSAPLE 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01949 764 CDD STKc_IRAK 460 742 - -
Gma11g01949 764 SUPERFAMILY RCC1/BLIP-II 60 258 IPR009091 -
Gma11g01949 764 Pfam Protein kinase domain 457 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g01949 764 SMART serkin_6 454 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g01949 764 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 188 757 - -
Gma11g01949 764 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 6 185 - -
Gma11g01949 764 Gene3D - 55 307 IPR009091 -
Gma11g01949 764 Gene3D Transferase(Phosphotransferase) domain 1 536 748 - -
Gma11g01949 764 MobiDBLite consensus disorder prediction 410 437 - -
Gma11g01949 764 SUPERFAMILY Protein kinase-like (PK-like) 432 740 IPR011009 -
Gma11g01949 764 ProSiteProfiles Protein kinase domain profile. 454 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma11g01949 764 Gene3D Phosphorylase Kinase; domain 1 426 535 - -
Gma11g01949 764 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Gma11g01949 764 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 188 757 IPR044815 GO:0004674
Gma11g01949 764 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 6 185 IPR044815 GO:0004674
Gma11g01949 764 ProSitePatterns Protein kinases ATP-binding region signature. 460 482 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01949 Gma-Chr11 25129162 25131889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01949 1 755 Receptor kinase-like Gene Family AT3G55950 47.215 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gma11g01949 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01949 - - gmx:100802403 1368.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01949 11 25129162 25131889 Gma11g01949 11 25129162 25131889 ECH
Gma18g00587 18 5791700 5794138 Gma11g01949 11 25129162 25131889 GST