Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01944 ATGGGGGATGAGCATGGAAGACAAGAAGGGTTGCATCATAAAATTTCAGCTTTGCTTGAGTTTTCGGCCGCAGATGATGTGACGTCTTTCAAAGATGCTGTTGAAAAAGAGGGTCATGATGTTGATGAGGTGGGGTTGTGGTATGGAAGGAGGGTTGGCTCAAAGGAATTGTGTTTTGAAGAGAGGACCCCTCTTATGATTGCTGCCATGTTTGGAAGCAAAAGTGTTTTGTCTTATATTCTTGGGACGGGTCGTGTTGATGTTAACCGGGCTTGTGGGTCAGATGGGGCTACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCTTCCGCTTCCCTTGAAGTCATCAAGCTTTTGCTCGACGCATCGGCGGATGTTAGTACTGTTGACGCCAATGGAAACAGGTCGTGCGACTTGATTTTTTCGGTGTCTAATGGTGTATTCAATTCAAGAAAGAGGATACTACAAGCCGTACTAGAAGGTGCAGATGGTATTGATGAGGCTTGCCTCAGATTTGAGGAAGCAGTTGGCCAAATGGAGAAACAGCAACAGCAAGATGTAGATGCACTTCAGGTTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTGTTGATCTCTCTCTTCCAGATATAAAAAATGGGATATATAGCTCAGATGAGTTTAGGATGTATACATTCAAAGTTAGGCCTTGCTCAAGAGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGTTCATCCCGGGGAAAATGCAAGGCGCCGTGATCCAAGGAGATATCAATATAGCTGTGTCCCTTGCCCCGAGTTTCGGAAGGGATTCTGCAGCAAGGGGGATGCCTGCGATTATGCGCACGGTATTTTTGAGTGCTGGCTTCACCCTGCGCAATATAAAACAAGGCTTTGCAAGGAGACAGGATGCACCAGAAGAGTTTGTTTCTTTGCTCACAACGTGGAGGATCTCCGCCCTGTGTATGCTTCAACTGGTTCTGCTATGCCTTCTCCCAGATCATATTCTGTTAGTTCTCCTCCATTGGACCCTTTCACACTGGGCTCTCCATCTGCCTTGATACCACCTGCCTCATCCCCACCTTTGACTCCGTCTGGAGGATCTTCTCCTGCGGGTGGAACCATGTGGCACTCTCAGATTCATGTTGCTGTCCCTACCCTTCAGCTGCCCCAAAGCAGATTGAAATCTGCGCTAAATGCTAGAGATGTTGAATTGGACATGGAATTGCTTGGAATTGAAAATCATCGATGCTTGATGCAGCAGCTAATGATGGAGGGGACGGCTGGTCTTTCATCACCTTCTAACTGGAATAACTCCATGCCTAATAGTCCATCTCTTTGTGATTATACTGGGGACTTCAATAGGCTTTCAGGAGTGCAACCTACTAACCTTGAAGACGTTTTCGGGTCTCAGATACAATCTCCAGCCAGAATTCAAGTGCATCAAAATGTGAACCAGCAACTGAGAGGCTATCCCTCCAACCTTTACAATTCAAGCGTGATAGGATCGCCCTCATTCAGGGTTGATCCATCTGGGGCAGCAGCCGCAATGGCTTTGAATCCAAGAAATGCTGCCTTTGCTAATCGGAGCCAGAGCTTTATGGTTAACGGTGATACTGAGTTTCCTTCTCCTGCTACCTCTACTGCTGCCAAGCCTTCTACCTTCTCTGGTTGGGGTCCCTCTGATGGCAAGTTAGATTGGTCCATCCGTGGTGATGAACTAAAGAAGCCGAGCAAATCTTCTTCTGTAGGATTTTTGAAGCAGCAGTAG 1773 0.4698 MGDEHGRQEGLHHKISALLEFSAADDVTSFKDAVEKEGHDVDEVGLWYGRRVGSKELCFEERTPLMIAAMFGSKSVLSYILGTGRVDVNRACGSDGATALHCAVAGGSSASLEVIKLLLDASADVSTVDANGNRSCDLIFSVSNGVFNSRKRILQAVLEGADGIDEACLRFEEAVGQMEKQQQQDVDALQVSKDGTEKKDYPVDLSLPDIKNGIYSSDEFRMYTFKVRPCSRAYSHDWTECPFVHPGENARRRDPRRYQYSCVPCPEFRKGFCSKGDACDYAHGIFECWLHPAQYKTRLCKETGCTRRVCFFAHNVEDLRPVYASTGSAMPSPRSYSVSSPPLDPFTLGSPSALIPPASSPPLTPSGGSSPAGGTMWHSQIHVAVPTLQLPQSRLKSALNARDVELDMELLGIENHRCLMQQLMMEGTAGLSSPSNWNNSMPNSPSLCDYTGDFNRLSGVQPTNLEDVFGSQIQSPARIQVHQNVNQQLRGYPSNLYNSSVIGSPSFRVDPSGAAAAMALNPRNAAFANRSQSFMVNGDTEFPSPATSTAAKPSTFSGWGPSDGKLDWSIRGDELKKPSKSSSVGFLKQQ 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01944 590 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 7 589 - -
Gma11g01944 590 Gene3D - 11 154 IPR036770 -
Gma11g01944 590 Gene3D - 259 321 - -
Gma11g01944 590 ProSiteProfiles Zinc finger C3H1-type profile. 259 286 IPR000571 GO:0046872
Gma11g01944 590 SUPERFAMILY Ankyrin repeat 57 134 IPR036770 -
Gma11g01944 590 MobiDBLite consensus disorder prediction 349 376 - -
Gma11g01944 590 Pfam Ankyrin repeats (3 copies) 53 127 IPR002110 GO:0005515
Gma11g01944 590 PANTHER UNKEMPT FAMILY MEMBER 7 589 IPR045234 -
Gma11g01944 590 MobiDBLite consensus disorder prediction 538 590 - -
Gma11g01944 590 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
Gma11g01944 590 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515
Gma11g01944 590 SMART ANK_2a 60 90 IPR002110 GO:0005515
Gma11g01944 590 SMART ANK_2a 95 127 IPR002110 GO:0005515
Gma11g01944 590 MobiDBLite consensus disorder prediction 538 556 - -
Gma11g01944 590 SMART c3hfinal6 294 316 IPR000571 GO:0046872
Gma11g01944 590 SMART c3hfinal6 259 285 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01944 Gma-Chr11 24990252 24992024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01944 13 585 C2H2 Transcription Factor Family AT5G12850 39.652 1.74e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma11g01944 Ank_2 4.6e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01944 - - gmx:100806121 1146.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01944 11 24990252 24992024 Gma11g01944 11 24990252 24992024 ECH