Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01939 ATGCAGGAAGGACTTATAGGTCTCTTGCTTCACTTCATAAGGAACCTTGATCAACAAACTCTTAATATAGTTAGAGAAAATCGCATTATGGCCGTTTTCTGTGAGCAACAGGACTATACTTCAAAACCAAAGGTAAAACGACTCGCTGCCATTGGATTGAAAAACATATCAGAATTTGGAAGTTCGGTTACTGCTAGGGACTTTAAACCACCATCTTCCAGTGGGTTCTGCTCTTCCCTTGTGCTCGTGTGTGGGAAAGCCTCTAGTCAACCTTCCACGTGCCCCATTCACAACTGCATGTGCGACAAAGATAGTCAGCTGTGCCTGCTTAAGAGCAACTGTATCAAACCCCTTGTTGACATCCTCCATGACAATGACACTGATGTTCAGCTTGCTGCAGTGGATGCTCTATCTACTCTAGTACTAGATTACACGTCTCGTAGTTTCAAAAGAGTTGTGGAAGAGCTTAAGCATTTGGGTGCAATTGATCTCTTATCACTCTTTTTACAGAAGTTAGATTTGAGCAGCTTCAGGAGAAGACAATTTGGATGA 552 0.4257 MQEGLIGLLLHFIRNLDQQTLNIVRENRIMAVFCEQQDYTSKPKVKRLAAIGLKNISEFGSSVTARDFKPPSSSGFCSSLVLVCGKASSQPSTCPIHNCMCDKDSQLCLLKSNCIKPLVDILHDNDTDVQLAAVDALSTLVLDYTSRSFKRVVEELKHLGAIDLLSLFLQKLDLSSFRRRQFG 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01939 183 Gene3D - 1 175 IPR011989 -
Gma11g01939 183 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 168 - -
Gma11g01939 183 SUPERFAMILY ARM repeat 17 155 IPR016024 -
Gma11g01939 183 SMART arm_5 102 142 IPR000225 GO:0005515
Gma11g01939 183 SMART arm_5 17 58 IPR000225 GO:0005515
Gma11g01939 183 Pfam Armadillo/beta-catenin-like repeat 107 140 IPR000225 GO:0005515
Gma11g01939 183 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01939 Gma-Chr11 24868093 24868644 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01939 3 165 U-box Gene Family AT1G68940 27.811 1.38e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01939 - - gmx:102659945 290.812