Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma11g01899 | ATGCCAACCCAACCAGATTCACCACCCAACAACAACACGTTGACCCAAATGTTTCAGAACATCTTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCCCTTCTCTTAGTAATCCTCTTTGTCCTTCTTCTTCACCTCTACGCCAAGTGGTTCCTCGCTCAAGCACAGGCTCAGGCCAACGCCCGCCGCCGGAGGCGGCGCCGTCGCACGACGGTGACCGTCTCCGACGTCCTAGGCCCGGCAAGGTTCCACCACTTCCACAGCTTCACCATAGAAGACAGTTCACCCCTCTCAACAAAAGGGTTAGATTCTTCAACCATTAGAACAATTCCACTGTTCATCTATGAACACAACAACAACAACAACAAAAAGGTCGAAGAAGAAGAAGAAGAACTTGAATGTGTGATTTGTTTGAGTGCATTTAAGAATGGTGAAGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGCTTCCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAACCTCAATTGTAGCAAGTATTGTGGAAAATAATTCTAGTGATGATCATCATGGTGGAGATCATGATTTGGTTGAGATTGTGACTGAAGGTGGTTCTGCTGCTCCAAGTTTTGAGACTAGAGAGGGTGAACATGGGAATAGTAATAATGGAAATGGAGGAGCAAGAACAAGTGTTTCTGTTGTGTCAGAAAATTCTTCTTCTGAGTTCTTTGGATGCTCTTTGGAGAGAATGCTTGGCAAGGTTTTCCCAATATCAAGTCAAGTGGGTCAAACAACCTGTGCAAGTGAGCCCATAAAAATGATGTTTGCTTCGCGgcaattgcttggggcacccagcaacgtggataaaagggtgaaaatgcccttcaccttttaa | 909 | 0.4224 | MPTQPDSPPNNNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKWFLAQAQAQANARRRRRRRRTTVTVSDVLGPARFHHFHSFTIEDSSPLSTKGLDSSTIRTIPLFIYEHNNNNNKKVEEEEEELECVICLSAFKNGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRTSIVASIVENNSSDDHHGGDHDLVEIVTEGGSAAPSFETREGEHGNSNNGNGGARTSVSVVSENSSSEFFGCSLERMLGKVFPISSQVGQTTCASEPIKMMFASRQLLGAPSNVDKRVKMPFTF | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma11g01899 | 302 | MobiDBLite | consensus disorder prediction | 212 | 236 | - | - | |
| Gma11g01899 | 302 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 183 | IPR013083 | - | |
| Gma11g01899 | 302 | PANTHER | RING-H2 FINGER PROTEIN ATL51-RELATED | 1 | 268 | IPR044675 | - | |
| Gma11g01899 | 302 | SMART | ring_2 | 136 | 177 | IPR001841 | - | |
| Gma11g01899 | 302 | MobiDBLite | consensus disorder prediction | 219 | 236 | - | - | |
| Gma11g01899 | 302 | PANTHER | - | 1 | 268 | - | - | |
| Gma11g01899 | 302 | CDD | RING-H2_EL5_like | 136 | 178 | - | - | |
| Gma11g01899 | 302 | ProSiteProfiles | Zinc finger RING-type profile. | 136 | 178 | IPR001841 | - | |
| Gma11g01899 | 302 | SUPERFAMILY | RING/U-box | 128 | 184 | - | - | |
| Gma11g01899 | 302 | Pfam | Ring finger domain | 135 | 178 | IPR001841 | - | |
| Gma11g01899 | 302 | Coils | Coil | 117 | 137 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma11g01899 | Gma-Chr11 | 23910128 | 23915820 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma11g01899 | 9 | 185 | Rapid Response to Elicitors | AT3G16720 | 36.464 | 3.30e-29 | 111 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma11g01899 | - | - | gmx:100816238 | 337.035 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma11g01899 | 11 | 23910128 | 23915820 | Gma11g01899 | 11 | 23910128 | 23915820 | ECH | |
| Gma18g00569 | 18 | 5510927 | 5511742 | Gma11g01899 | 11 | 23910128 | 23915820 | GST | |
| Gma11g01899 | 11 | 23910128 | 23915820 | Gma14g01942 | 14 | 50201522 | 50202247 | PCT | |
| Gma11g01899 | 11 | 23910128 | 23915820 | Gma02g02166 | 02 | 47530909 | 47531625 | PCT | |
| Gma14g01942 | 14 | 50201522 | 50202247 | Gma11g01899 | 11 | 23910128 | 23915820 | PCT | |
| Gma02g02166 | 02 | 47530909 | 47531625 | Gma11g01899 | 11 | 23910128 | 23915820 | PCT |