Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01898 ATGGATACGCTTCAGAGTTCAGGCTGTGATAGTTGCTTGTCGACAGACCCGGTTCACAATTATGCAGATTTTGGCGTGAGGCTATGGTTTCCAGTTCGTGATTTTCGTTCTTCTGTGGTTGAAGGTCTATGTAATTTTATGGCGAGGATTCCTGACAAGATTAGGTCTATTGATGGATCAAAAGAAACGCTTAAGCTTGCTGTTAGGATCACCGATCTTTGGTTCGTTGGGACTCCTAACAAGTCTGAGCAAGCGGAGATGGTTTTTGTTGATTCTGAGGGTGATCAAATTCATGCTATTTGTAAATCGGACCACCTCAAGTCTTGGAAAGCTGATTTGAAAGAGAATTGCACTTATGTTATGCATAATTTCAAAGTTGTTAAGAATGATGGTCAATTTAGAGAATTTAGATTTGTTGAATTTGCAAATGTTGTTGCTGGCAATTTTGTGTCTGGCCTGTTGGTTGATATTATTGGGGTCGTTGATCAGGTGGTCTTTCGGCATGTTTCATCGAAAAATACCAGGGTTGTTTTTAGAATGAAGGATTTGAGTGGTGAAATTTTGTCTTGCACACTTTGGGAGAATTACTGTACTCAGTTCCTATCCTATTTGAATGAACGCGGGGATGATGGGCCGATGGTTATTATATTGACACATGCCAGAATAAAAGATGCACAGGGTAAGTCAAAACTATTGATTAATGATCCTATATTGGAAATTCAGGAATTTAAAGAGAGGTATTTTGCTTATCATCTTTGCTCTCTATCATCAAAGGATTCGTTTCTTTCAAAGGCTGAAGCCAAAACTATTTTAGAAATCAATGCCATTTCTGAGGACGCTGTTTGTGTTACGATGGGGACTATTAGCAAAATAGTCATGGATAACTATTCATGGTGTTATCCAGCCTGTGCTCAATGTCATAGGAAAACTGACATCCAAACAGGACCATTCACATGTGGATGTGGCAAGGATAATGATCAACCTGTTCTGAGGTATAGAGTTGAAGTCATGGTTACCCAAAACAATGAGAGTAGCAAATTTTTGCTCTGGGACCGTGAATGTGCTGAATTGATTGGTGAAACAGCTGATGATGTGAATAGGGTCAAGATTGAAGATGGTGATCTTGATTTGAATGCTTCCCCTCAAGCACTTGACAAATTGTTGGGTCATGTGCTTGCTTTTAAGGTCAGGATTCAATCAAAATTAAAAAATGCAGTTGTACTTAGATACTCAAAAGACCTGGATTTGATCAATGTTGTTCTCGAGATGCTGCCTGATAGTGAGGCATGTTCCAAAATAGATCCTTCCAATGTTGATTGCAATGATGCTACACAAGCTGAACGTCAATCTCTGTCTGTCACAGCTGACCATGATCCGGTTGCGGGATTGCCTTTAACACCCAAAAAGCGGATGTCATATGATGAAGCCGATGATGAGTTAGGGAGCTCTCAAATTTCGCCAGCCCAACTATCGTCTAACAAATTAACAAGACATTCTCATAAGAGCTAA 1509 0.3976 MDTLQSSGCDSCLSTDPVHNYADFGVRLWFPVRDFRSSVVEGLCNFMARIPDKIRSIDGSKETLKLAVRITDLWFVGTPNKSEQAEMVFVDSEGDQIHAICKSDHLKSWKADLKENCTYVMHNFKVVKNDGQFREFRFVEFANVVAGNFVSGLLVDIIGVVDQVVFRHVSSKNTRVVFRMKDLSGEILSCTLWENYCTQFLSYLNERGDDGPMVIILTHARIKDAQGKSKLLINDPILEIQEFKERYFAYHLCSLSSKDSFLSKAEAKTILEINAISEDAVCVTMGTISKIVMDNYSWCYPACAQCHRKTDIQTGPFTCGCGKDNDQPVLRYRVEVMVTQNNESSKFLLWDRECAELIGETADDVNRVKIEDGDLDLNASPQALDKLLGHVLAFKVRIQSKLKNAVVLRYSKDLDLINVVLEMLPDSEACSKIDPSNVDCNDATQAERQSLSVTADHDPVAGLPLTPKKRMSYDEADDELGSSQISPAQLSSNKLTRHSHKS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01898 502 SUPERFAMILY Nucleic acid-binding proteins 268 401 IPR012340 -
Gma11g01898 502 PANTHER REPLICATION FACTOR A 1, RFA1 57 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma11g01898 502 MobiDBLite consensus disorder prediction 449 502 - -
Gma11g01898 502 Pfam Replication factor-A C terminal domain 285 400 IPR013955 -
Gma11g01898 502 CDD RPA1_DBD_A_like 65 134 - -
Gma11g01898 502 Gene3D - 52 136 IPR012340 -
Gma11g01898 502 Gene3D - 254 416 IPR012340 -
Gma11g01898 502 SUPERFAMILY Nucleic acid-binding proteins 136 248 IPR012340 -
Gma11g01898 502 Gene3D - 137 251 IPR012340 -
Gma11g01898 502 CDD RPA1_DBD_C 264 398 IPR013955 -
Gma11g01898 502 CDD RPA1_DBD_B_like 156 248 - -
Gma11g01898 502 SUPERFAMILY Nucleic acid-binding proteins 54 135 IPR012340 -
Gma11g01898 502 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 57 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01898 Gma-Chr11 23806126 23810139 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01898 128 374 Core DNA Replication Machinery Family AT5G45400 24.373 1.22e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01898 - - gmx:102666776 734.176