Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01782 ATGGCGAGAAAGAAGGTTGACTTTACATACATAAGCAATCCGAGGAAGAGGAAGGCTGCATTGAAGAAAAGGAAAAATGGTTTGCTGAAAAAGATTGATGAAATCACAACCCTTTGTGGCATTCAGGCATGCGCTATAATTTATACTCCAGACGAACCTGAGCCTGAGGTTTGGCCATCCAACCAAGGAGTGGAAAGTGTGATTTTCAACTTTAGGGGAGTTTCTGAATCGGCACGAAACAAAAGAATGTTTTGTCAAGAGTCACTTTTAATGAAAAACATAACCTTAGCACAAGGGCAGCTCAAGAAACTTAGGGATGAAAACAGAAAGAAGGAGATAGGCCTTTTCTTGTGTCAATACTTTGCTGGTGGTAACAACCTTGGCAAGTGCAACATTATTGATCTGAATGATATCACGTTCTTGGCTGATAAAAAATTGGAGGAGATTACAAAGAAAATTGAAATGCTCCTTGTCCAAGAGGTGACACCAGCTACTGAAAATGAGGATAAACCGTGA 516 0.4012 MARKKVDFTYISNPRKRKAALKKRKNGLLKKIDEITTLCGIQACAIIYTPDEPEPEVWPSNQGVESVIFNFRGVSESARNKRMFCQESLLMKNITLAQGQLKKLRDENRKKEIGLFLCQYFAGGNNLGKCNIIDLNDITFLADKKLEEITKKIEMLLVQEVTPATENEDKP 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01782 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma11g01782 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma11g01782 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma11g01782 171 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Gma11g01782 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gma11g01782 171 PANTHER MADS BOX PROTEIN 2 162 - -
Gma11g01782 171 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Gma11g01782 171 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gma11g01782 171 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01782 Gma-Chr11 20156876 20157537 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01782 1 156 Type I MADS-box Gene Family AT5G48670 44.231 9.21e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma11g01782 SRF-TF 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01782 - - gmx:100781335 332.413