Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01726 ATGTCCAGCGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTACGGTTCTCACACTCACTCCCCGCGACGACTCAGACACCACCGACATACCCTTCCCCGAGCCATGCGAAATCTTCGGCGAAGGGGGCGAGGTCGGCTTCCGGACCCCGAACGGCGTCGTTCTGGGCCCGGTGCTCGATTCGTTGCAATGCGGCGGTGGCGGCGGTGGCGGCTCCAACAAGATCAAGAGAAGGAACAAGATTGGAATGGTGAACGGGAGCGTGAGCGTGGTTCACCAGCTCCACGCCATGGTCACTCGCAAGTGCGCCAGAATCGACGCTCGCGTGGTGTGCGTTGAAGCGCTTCCTAGGGTTGTGGTGCTGGTTGACGTGTATGTCCCCGTTCAGGTATGGAGTGGCTGGCAGTTTCCGAGATCGGGACCCGTCGCTGGCGCCGTTTTTCGCCATTTGAGCTGTGATTGGAATGAGAGACGTTCAATGCTTTCATATCCAGACTATTGTAGGAAGACTTATGGAGCAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTCCGGTGTGAGCAATTCTTCAAGGAAAATACTATTTCAACTTCATGAAATTTTTAAGGCACTACCTGGTGTAGGAAAGCGGCAGACATTTAATAGTTCCAAGATAATACCTATGGATAACATTTGCAGATCAGGCATTTGGGAGTTATCTGATGATATTTTAACTAAGATTTTAGCTTCCCTGGGCCCAATGGACCTCACTAGGGTTTCTGCAACATGTCATCATTTAAGATCCTTGGCTGCTTCGGTAATGCCTTATACCAAGTTAAATCTGTTTCCTCATCAGAGGACAGCAGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTTGCCACATCCGTTATTTGTAGCTCTCTCAACTGAAGATGGCTTTAGTTTCCATGTAAATACTGTAACTGGTGATATTGTTACTGGGGAAGCTCCCACCGTCAAGGATTTTCGTGGAGGAATGTTTTGTGACGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTATGAAGACGCGAGGTACATTGGCAGACCCGCCAGATGGGGCACAAGTAGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGATATTACGAGGTCAGTGTTAGTGGTAATCACATCACTGGTTGTACTACCTTGGGTAAGAGGGATGTGTGCCAAGATACCAGCAGAACTAATGATAACCATGATTACTCCTCCAAAAGAGCCAGATTGATAGATCCTGATCAGCAAATAACTAAACTTCATGATTCATGTTCCAGGGAAGAAAACAAATCACCTGTTGATGCATGTTTCAAGGAATCTATGCATTCAAATCAGTTCACTGGGAGTTTGAGTCGCATAAAGAAAAATCTACATTTCACATTTGAAGATGAAGCTATGATTTCCAAGGAAATAGAAATTGGTGAAGGATTAATTAAAGCAAAGCATGCATTAGATGTTACATCTCATGTATCTCAAAACAAGTCGCCTGGGAAGCCTAAAGGTGACTGTTTTGAGTACAATGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTTGTAGACAATAGTATGGCTAATTCTAGTGCAGCATGGTTTTGTAGTATGAACACTGACCCTCTGTATCAAAGTTGTAGTGTCCCTGAACAACATTTTCATAATATCTGTAAGATAACACACTTGCCAGGGTTTCATTTGAAAGGAACTTGTGGAGGTGAGAAACAAAATGTTTCTTTTTTCACTAGCGTGCTTAAGGAGCACTACTCCTTGATAAATTCTCAGACAAAGAAGGCCCTGACGTGGTTGGCTAAAATTTCAACAGACAAGCTTGCAGGAATGGAAACAAATGGCATCAGGGGTCCTATTTTAAACATTTGTACTGCATCTAATAGACATTTCCACAAAATATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGAGAAAGGTGTTTGCAAGTGGTACTACCCTCAACATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCTCTCCGTGAACCATTAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACGCAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGGGTTTATGTTTGGACTGATCATCAAAAGCCATCTGTGCATTGTCTTGCATGGGATTATGATGTTGTCATAACTACTTTTAGTCGTTTGAGTGCAGAGTGGGGCCCACGTAAGAGGAGTGCTTTGATTCAAGTGCATTGGTTTAGGATAATTTTAGATGAAGGGCACACTCTTGGGTCAAGCCTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCAAATCGATGGATACTAACAGGAACTCCAACGCCTAACACTCCTAACAGCCAACTTCCTCATCTACAACCATTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTTAGGCCATTTGAAGCAGAGATGGAGGAAGGGAGGTCTCGTCTGTTACATTTACTTCAAAAATGCATGATTAGTGCTAGAAAGATAGATTTACAAAGCATTCCACCATGCACGAAGAAAGTTGTTTATCTAGATTTTAATGAGGAGCATGCTAGGAGTTACAATGAATTGGTAATCACTGTACGACGTAATATATTGATGGCTGATTGGAATGATCCTTCACATATTGAGAGTCTACTGAATCCAAAACAGTGGAAATTTCGTAGTGCAACTTTAAAAAATGTGAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGAGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTGGACCCTACTTCAGGAGAGTATACCTCCGTAAGATATAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGTCGCCTTCCACTCATTACCCCATGTCGGCATCTGTTGTGCCTTGATTGTGTTTCTATAGACAATACCAAGTGTACTTATCCTGGCTGCAGTAAATTGTATGAGATGCAGAGTAGAGAGGCCCGACCTGAAAATCCTAAACCGAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAGCAGGCATGGTTAATGGAGAACTCAGATAATTGGGATCCTGATTGGCAATCTACATCTAGTAGTAAAGTCTCCTATCTCGTCCAGAGGTTGAAAGCTTTGCGAGGAACCAATGAAGAGACATACTTCAATACAGAAAATAGCAATGATGATTTGCATATTGAGAATAGTTTGCATAGAAGTGATGACAAATCATCAATTCAGACATGTTCTATGAGCAGCACTAAGACCAATTTGAACCCTGAGAAAGTTCTGATATTTTCTCAATTTCTTGAGCATATACATGCCATTGAACAGCAGTTGACTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCATTAGCCATGTTCCAGCATGATTCAAATTGTATGGCACTTCTGATGGATGGAAGTGCTGCATTGGGTCTTGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACCGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCATCGTATGGGTGCTTCTCGTCCTATTTATGTGGAAACATTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGACTTTTTACAGGATGCTGATAACTTTAGAAGATCACCAATTAAGGATGCTACCGAATCTGTTGATGATAGTGGGGGACGAGGATATAGATCATTGCATGATTTTGCTGAGAGTAGTTATCTACTGAAACTTAGATCTGTGTATACTAATTTGGAAAGTCCAAAAGGTGTTTGA 3990 0.4261 MSSDTSFADHKLCGFLCTVLTLTPRDDSDTTDIPFPEPCEIFGEGGEVGFRTPNGVVLGPVLDSLQCGGGGGGGSNKIKRRNKIGMVNGSVSVVHQLHAMVTRKCARIDARVVCVEALPRVVVLVDVYVPVQVWSGWQFPRSGPVAGAVFRHLSCDWNERRSMLSYPDYCRKTYGANESIWNLSDCHVLGCKLHSGVSNSSRKILFQLHEIFKALPGVGKRQTFNSSKIIPMDNICRSGIWELSDDILTKILASLGPMDLTRVSATCHHLRSLAASVMPYTKLNLFPHQRTAVEWMLHRERNAELLPHPLFVALSTEDGFSFHVNTVTGDIVTGEAPTVKDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPDGAQVVWCQHNGNQKCGYYEVSVSGNHITGCTTLGKRDVCQDTSRTNDNHDYSSKRARLIDPDQQITKLHDSCSREENKSPVDACFKESMHSNQFTGSLSRIKKNLHFTFEDEAMISKEIEIGEGLIKAKHALDVTSHVSQNKSPGKPKGDCFEYNDTWIQCDACHKWRKLVDNSMANSSAAWFCSMNTDPLYQSCSVPEQHFHNICKITHLPGFHLKGTCGGEKQNVSFFTSVLKEHYSLINSQTKKALTWLAKISTDKLAGMETNGIRGPILNICTASNRHFHKIFQAFGLLKRVEKGVCKWYYPQHLNNLTFDVAALGMALREPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRVYVWTDHQKPSVHCLAWDYDVVITTFSRLSAEWGPRKRSALIQVHWFRIILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLQKCMISARKIDLQSIPPCTKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHIESLLNPKQWKFRSATLKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSVRYNLLYGGHCVRCKEWCRLPLITPCRHLLCLDCVSIDNTKCTYPGCSKLYEMQSREARPENPKPKWPVPKDLIELQPSYKQAWLMENSDNWDPDWQSTSSSKVSYLVQRLKALRGTNEETYFNTENSNDDLHIENSLHRSDDKSSIQTCSMSSTKTNLNPEKVLIFSQFLEHIHAIEQQLTIAGIKYTGMYSPMHSSNKKKSLAMFQHDSNCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIYVETLAMRGTIEEQMLDFLQDADNFRRSPIKDATESVDDSGGRGYRSLHDFAESSYLLKLRSVYTNLESPKGV 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01726 1329 Pfam CW-type Zinc Finger 532 575 IPR011124 GO:0008270
Gma11g01726 1329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1145 1294 IPR001650 -
Gma11g01726 1329 ProSiteProfiles F-box domain profile. 237 283 IPR001810 GO:0005515
Gma11g01726 1329 SUPERFAMILY F-box domain 234 276 IPR036047 GO:0005515
Gma11g01726 1329 SMART ultradead3 281 853 IPR014001 -
Gma11g01726 1329 SMART helicmild6 1169 1251 IPR001650 -
Gma11g01726 1329 Gene3D - 1062 1310 IPR027417 -
Gma11g01726 1329 ProSitePatterns Zinc finger RING-type signature. 1020 1029 IPR017907 -
Gma11g01726 1329 CDD DEXDc_SHPRH-like 706 883 - -
Gma11g01726 1329 Pfam F-box domain 242 280 IPR001810 GO:0005515
Gma11g01726 1329 Gene3D - 691 886 IPR038718 -
Gma11g01726 1329 ProSiteProfiles Zinc finger CW-type profile. 527 578 IPR011124 GO:0008270
Gma11g01726 1329 Gene3D - 527 580 - -
Gma11g01726 1329 CDD SF2_C_SNF 1154 1261 - -
Gma11g01726 1329 SMART fbox_2 243 283 IPR001810 GO:0005515
Gma11g01726 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 1307 IPR027417 -
Gma11g01726 1329 PANTHER OS01G0952200 PROTEIN 39 1310 - -
Gma11g01726 1329 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 39 1310 - -
Gma11g01726 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 367 IPR027417 -
Gma11g01726 1329 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 687 842 IPR014001 -
Gma11g01726 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 882 IPR027417 -
Gma11g01726 1329 Pfam Helicase conserved C-terminal domain 1150 1251 IPR001650 -
Gma11g01726 1329 Pfam SNF2-related domain 288 925 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01726 Gma-Chr11 19144722 19152770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01726 279 364 RAD5 or RAD16-like Gene Family AT5G22750 34.043 2.35e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma11g01726 SNF2_N 3.9e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01726 - - gmx:100803102 2682.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01289 04 21185277 21194466 Gma11g01726 11 19144722 19152770 GST