Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01649 ATGACGGAACCTCTCTCAAACACCGAACTCTCTTCTTCTAAAACCCTAGACCCAACCAACCGCCACGATTCCACTTCGGAACCGCATCAAACGGCTCCGGAAGAGGTTGAACTCAATCGAGAAGACGATGTCGTTCCGACCGCGAAACGGAAGAGGAACGACGGCGTCGTCGAAGACCGTTTGCTGCATCCACTGTGGAAGACCAGCCTCTGCTCCTACTTCCGGAGCCACAACGGATCGTGCAGCCACGGCGGTGCGTGTCGCTACGCGCACGGCGAGGAGGAGCTCCGCCTCCGCCCCGACAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAGGCGCTGAAGACCGAATCGGACGACAAGCGTGCTGTGTCGGAGGAAGTAATGATGACGGAGGCAGTAGTCGACGACGGCGATGCCGACGGCGACGACGGTTGTGGTGCCAATCACGCGCTTAGCAAATGCTTGGTGCATTTGCCGCGGAAATGGAGCTCTGAGAATTTTAGGACTTTTCTCAGCGAACAGGGTATAGCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAGTTGAAGAGTTCAACAAAGGAATTAGAAGGAAAATCAATTGGCAACAAAACGGTAAAGGTGGCTGATGTTCTTCCTCGGTCATTTGAAAAGAAAAGTAATGCCAGTGTTGCATCCCATCAAGAATTAGATGAGGGGGTTGATGTTGCTTCAAGTGGGACTTTGGATGGTGAAACAAATAATGATAACTTGGCAAAGACAAGAAATGTGCGTGATGCAGTGACTCCTCTAGCTCATATGGCCTATGCTGATCAGTTGGAGCAGAAAAAAAGCGCTCTCATGCTGATTCTCAAAAAACTTACTCGAAATGCTCGTAAAGCTTGTCCAAATGGTGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAGGTAGTGGTCTTCCGTGCAAACTAGAGGGTATTATTGCATCTCCAATTGTAAATGGATACCGTAACAAGTGTGAATTTTCTGTTGGATATTCTCTGGGAGGCAAAGTGACAGTAGGCTTCATGCTTGGAAACTTCAGCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAACGTTTCAACAATTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTGCAGGACAGTGATTTACCAGTTTGGAACAGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTTCGAGAAGGAAGAACAAATGGGAATGCTGTTGATGCTGAGACTTTTGGTGGTATTGCAGAGGTCATGCTTATTGTTTCTACTGCAAGCTTTGATGATGCAAAAGTAGCTGCTGAATTCAAGAGGCTTGCTCAGGCATTTGTTGTCGGAGCTACTTCGCATTGTTCGACATTACCCCTTACTGCTCTGGTTGTTCAGGATCACCAAGGAATATCCAATGTGGCGCCAGCTGATGCACCGCTGCATTTGCTTCCCATTCCTAAAGCAGCTGGTGATTCTGAGGTGGATGAAAATAATAATGCCAAGGATGTACGAATCCATGATTATGTCAACAATCTCCAGTTTTCTATATCTCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGACACACTGCTATTTGATATATGCTGTGGGACAGGGACAATTGGCTTGACGTTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCTGTATCTGATGCCCATAGGAATGCTGAGATTAATGGCATAAAAAACATTAAATTTATATGTTCGAAGgcagaggacgtaatgggatctctgttaagggaacacctgaatgtgactaaggaacaagttgatgatcctaatatctctggaaagggcaatgacagtcccgaggatagtgcatgcccagaacctgaaaatggtgaactagcatctcattgtccagaaaataacaatgcagaagttggaagtgaggttcagaagggtagcacttgtgaacaagctgatggtatctctgaacaggcagaggacgtgatgggatctctgttaagggatgatgcaaatatgcccaaggagcaaagtgattatccaaatatctctggaagtgggaatgacattcctgaggatagtaccttcccagtgcctgaaaatggtgaaactacatctcattcagaaagtaacaatgcagaagttggaggtgaggttcagaagggtagcacttCTAGAAATGGGAAGACTTCACTGCAACAGTTCAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCTGGCCTGCGGAGGCTTGTTTACATATCCTGCAATCCTGAAACTTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCTTAAAAATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCACAGGGCCAAATCTATGCCCATCTCAGAGGCATTCCATCCTGTAAAGGCTATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGATGGCAGAGTTGGCACCTTGATTCTTTTGATAATGCAATCAATTAA 2715 0.3838 MTEPLSNTELSSSKTLDPTNRHDSTSEPHQTAPEEVELNREDDVVPTAKRKRNDGVVEDRLLHPLWKTSLCSYFRSHNGSCSHGGACRYAHGEEELRLRPDNTWDPTSERAKKALKTESDDKRAVSEEVMMTEAVVDDGDADGDDGCGANHALSKCLVHLPRKWSSENFRTFLSEQGIAFKHAKKKKGMMIGFVTFEDEEQLKSSTKELEGKSIGNKTVKVADVLPRSFEKKSNASVASHQELDEGVDVASSGTLDGETNNDNLAKTRNVRDAVTPLAHMAYADQLEQKKSALMLILKKLTRNARKACPNGVSLPEWILKSREIGSGLPCKLEGIIASPIVNGYRNKCEFSVGYSLGGKVTVGFMLGNFSREGVTAVEEAVDCPNVSTIACKYATIFQEFLQDSDLPVWNRFKNTGFWRQLTVREGRTNGNAVDAETFGGIAEVMLIVSTASFDDAKVAAEFKRLAQAFVVGATSHCSTLPLTALVVQDHQGISNVAPADAPLHLLPIPKAAGDSEVDENNNAKDVRIHDYVNNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNIKFICSKAEDVMGSLLREHLNVTKEQVDDPNISGKGNDSPEDSACPEPENGELASHCPENNNAEVGSEVQKGSTCEQADGISEQAEDVMGSLLRDDANMPKEQSDYPNISGSGNDIPEDSTFPVPENGETTSHSESNNAEVGGEVQKGSTSRNGKTSLQQFKNVVAIVDPPRAGLHPTVIKALRTHPGLRRLVYISCNPETLVANAIELCTPSPLKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLERWQSWHLDSFDNAIN 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01649 904 MobiDBLite consensus disorder prediction 20 51 - -
Gma11g01649 904 SUPERFAMILY RNA-binding domain, RBD 159 231 IPR035979 GO:0003676
Gma11g01649 904 MobiDBLite consensus disorder prediction 713 772 - -
Gma11g01649 904 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 81 890 IPR045850 -
Gma11g01649 904 MobiDBLite consensus disorder prediction 100 121 - -
Gma11g01649 904 Gene3D Vaccinia Virus protein VP39 510 890 IPR029063 -
Gma11g01649 904 MobiDBLite consensus disorder prediction 638 692 - -
Gma11g01649 904 Gene3D - 156 225 IPR012677 -
Gma11g01649 904 MobiDBLite consensus disorder prediction 1 51 - -
Gma11g01649 904 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 66 93 IPR000571 GO:0046872
Gma11g01649 904 MobiDBLite consensus disorder prediction 740 772 - -
Gma11g01649 904 SUPERFAMILY CCCH zinc finger 63 98 IPR036855 GO:0046872
Gma11g01649 904 ProSitePatterns RNA methyltransferase trmA family signature 1. 785 817 IPR030390 -
Gma11g01649 904 MobiDBLite consensus disorder prediction 248 267 - -
Gma11g01649 904 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 81 890 - -
Gma11g01649 904 CDD AdoMet_MTases 573 627 - -
Gma11g01649 904 MobiDBLite consensus disorder prediction 253 267 - -
Gma11g01649 904 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 273 891 IPR010280 GO:0006396|GO:0008173
Gma11g01649 904 Pfam Methyltransferase domain 571 629 IPR025714 -
Gma11g01649 904 Coils Coil 283 303 - -
Gma11g01649 904 MobiDBLite consensus disorder prediction 671 692 - -
Gma11g01649 904 ProSiteProfiles Zinc finger C3H1-type profile. 65 94 IPR000571 GO:0046872
Gma11g01649 904 Gene3D - 60 98 - -
Gma11g01649 904 MobiDBLite consensus disorder prediction 1 19 - -
Gma11g01649 904 SMART c3hfinal6 65 93 IPR000571 GO:0046872
Gma11g01649 904 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 275 890 IPR029063 -
Gma11g01649 904 MobiDBLite consensus disorder prediction 719 733 - -
Gma11g01649 904 Pfam tRNA (Uracil-5-)-methyltransferase 771 825 IPR010280 GO:0006396|GO:0008173
Gma11g01649 904 CDD RRM_SF 156 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01649 Gma-Chr11 17838045 17848954 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma11g01649 tRNA_U5-meth_tr 1e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01649 K15332 - gmx:100816103 1760.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01649 11 17838045 17848954 Gma11g01649 11 17838045 17848954 ECH
Gma12g00604 12 5074836 5081475 Gma11g01649 11 17838045 17848954 GST