Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01648 ATGACTAGTACAGAGGAAAAGCCTGTGACTGTGAGTGAGGAACATGATGCAAGTTCTTGCAGAAGAACAGTTTCTCTTCCAGTTCAAAAGGTTGATGATCCAATGGCGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTTCTAGAAATACCCTCAAGAACAGAAGAGAGTTCTCAAGAATTTGTTGCAATCAAAATGCCACCGACACCCAGTTCCAATCCCACTCCTACTCCAAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTTGATCCTCCAACATATCATTCTCCTGGACCTTCAACATCAAGAGGCAAATCATCCATAAGAAACCTGCTCCCAAAACTGAGTTTCAGGTATCGGACACCGGCAGATATTGAAAAACCAAATACTGCAGCTCCAGAAGTTTCCTCTACAGGCACTGGAGAAAAGCCTTCAATCTCAAGATCATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGAGCGTCGTCATTACCACTAGATGAAATTAGACAATCAAACAATGAATCTTCTCAAGGTGGAAGTGTTGGTGGTCCCTTAAATAAAAGAGAAGCACAGCGGAAGATAGCTCGCTCTCTTTCAGTACCTGCCAATGACAAAGATAAAAGCCTAAGGAGGATGGATTCATTTTTCCGTGTTGTTCCTTCCACTCCTCAAGTAAAGGAAGGAAATGAATTGTTGGCCACACACACAACAAATGATACTGAAAATGAAGATGCTAATGGTGAAGATATAGCTGAAGAAGAGGCTGTTTGTAGAATCTGTCTGGTTGATTTGTGTGAAGGAGGCGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATAAAGGGTAACAAGACCTGCGATGTGTGCAAAGAGGAAGTTCGAAACTTACCTGTCACTCTATTACGGATCCAAAGTATTCGAAATCGGAATAATGGTGGTAATAGGACTCAGCTGGAAGATGTAAATGGATACAGGGTTTGGCAGGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGAACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTATTGGGTCTACTCTCCTCCATGACATCATCAACAATGGTGAAGAGCAGGTTCATCTGGATATATGCATCTGTTCAGTTTGCTCTAGTGGTTCTCTTTGCGCACATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATCCTTCTGGCCACATTTGCTGGCTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTATTTTAGATGGAGGAGAAGAGTGCAGGCTCTATCAGAGCAGCGACATGGCCCGCAACTGATGCCACAAGCAGGACAAAATCCTCGAACATCAAACGTGCAGCGTCCAGGTCCAGGTTCAGGTTCAGGTTTGGCTCCTTCCAACCACAGTCAACCTGTGGTGCAAAATCAACAGAACTCAAATCAGAGCTGA 1572 0.4351 MTSTEEKPVTVSEEHDASSCRRTVSLPVQKVDDPMAITEETTHVPPRKRQNLLLEIPSRTEESSQEFVAIKMPPTPSSNPTPTPKRVNFLVSSRSVDPPTYHSPGPSTSRGKSSIRNLLPKLSFRYRTPADIEKPNTAAPEVSSTGTGEKPSISRSLSLTKIFTPRIKRASSLPLDEIRQSNNESSQGGSVGGPLNKREAQRKIARSLSVPANDKDKSLRRMDSFFRVVPSTPQVKEGNELLATHTTNDTENEDANGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSIRNRNNGGNRTQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEYFRWRRRVQALSEQRHGPQLMPQAGQNPRTSNVQRPGPGSGSGLAPSNHSQPVVQNQQNSNQS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01648 523 MobiDBLite consensus disorder prediction 1 20 - -
Gma11g01648 523 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 489 - -
Gma11g01648 523 MobiDBLite consensus disorder prediction 473 523 - -
Gma11g01648 523 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Gma11g01648 523 SMART ringv_2 266 315 IPR011016 GO:0008270
Gma11g01648 523 MobiDBLite consensus disorder prediction 479 523 - -
Gma11g01648 523 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Gma11g01648 523 MobiDBLite consensus disorder prediction 199 213 - -
Gma11g01648 523 MobiDBLite consensus disorder prediction 173 213 - -
Gma11g01648 523 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Gma11g01648 523 MobiDBLite consensus disorder prediction 175 192 - -
Gma11g01648 523 MobiDBLite consensus disorder prediction 82 116 - -
Gma11g01648 523 MobiDBLite consensus disorder prediction 138 157 - -
Gma11g01648 523 CDD RING_CH-C4HC3_MARCH 267 315 - -
Gma11g01648 523 MobiDBLite consensus disorder prediction 56 74 - -
Gma11g01648 523 PANTHER OS02G0165000 PROTEIN 21 489 - -
Gma11g01648 523 MobiDBLite consensus disorder prediction 1 157 - -
Gma11g01648 523 SUPERFAMILY RING/U-box 263 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01648 Gma-Chr11 17830957 17836511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01648 264 370 C3H Transcription Factor Family AT2G37950 34.454 3.80e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01648 - - gmx:100815566 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01648 11 17830957 17836511 Gma11g01648 11 17830957 17836511 ECH
Gma12g00603 12 5056879 5061367 Gma11g01648 11 17830957 17836511 GST
Gma13g02909 13 43667025 43671547 Gma11g01648 11 17830957 17836511 PCT
Gma11g01648 11 17830957 17836511 Gma13g02909 13 43667025 43671547 PCT