Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01642 ATGGCTAAAGATGTTGAGGTTCAAGAGCAAGGAGGAGAGTACTCTGCAAAAGACTACCATGACCCTCCTCCAGCACCCTTGTTCGACCCAGAGGAGCTCACACAGTGGTCCTTTTATAGAGCCCTAATCGCTGAGTTCATAGCAACCCTTCTCTTCCTTTATGTCACCGTGCTCACCATTATTGGCTACAAAAGGCAGACTGATGCCACGCTAGGTGGCACCGAGTGTGATGGGGTTGGCATTTTGGGCATCGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATTTCAGGAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTCCTAGGACGCAAGGTTTCGTTGATAAGGGCGTTGTTGTACATGGTAGCACAGTGTGCCGGTGCTATCTGTGGCACTGGATTGGCCAAGGGGTTCCAAAAATCATACTACAACAGGTATGGAGGTGGTGCCAACTCTGTTGCTGATGGCTACAACAATGGTACTGCTTTGGGTGCTGAGATTATCGGTACCTTCGTTCTTGTCTACACTGTCTTCTCTGCCACTGACCCTAAGAGGAACGCTAGGGACTCCCATGTTCCTGTACTGGCACCACTTCCTATTGGATTTGCCGTGTTCATGGTTCACTTGGCTACAATCCCAATTACTGGTACTGGCATTAACCCAGCAAGGAGTTTCGGAGCAGCTGTAATCTACAACAAGGACAAAATCTGGGATGACCAGTGGATATTCTGGGTTGGACCAATTGTTGGAGCAGCAGTGGCTGCATTCTACCACCAATACATCCTTAGAGCAGCAGCTATCAAGGCTCTTGGATCCTTCAGAAGCAACGCTTAA 861 0.4971 MAKDVEVQEQGGEYSAKDYHDPPPAPLFDPEELTQWSFYRALIAEFIATLLFLYVTVLTIIGYKRQTDATLGGTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLIRALLYMVAQCAGAICGTGLAKGFQKSYYNRYGGGANSVADGYNNGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKDKIWDDQWIFWVGPIVGAAVAAFYHQYILRAAAIKALGSFRSNA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01642 286 PANTHER AQUAPORIN PIP2-7 1 286 - -
Gma11g01642 286 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma11g01642 286 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma11g01642 286 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma11g01642 286 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma11g01642 286 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma11g01642 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma11g01642 286 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma11g01642 286 SUPERFAMILY Aquaporin-like 31 272 IPR023271 -
Gma11g01642 286 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma11g01642 286 Gene3D Glycerol uptake facilitator protein. 25 286 IPR023271 -
Gma11g01642 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 286 IPR034294 -
Gma11g01642 286 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma11g01642 286 ProSitePatterns MIP family signature. 106 114 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01642 Gma-Chr11 17791663 17793361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01642 1 284 Major Intrinsic Protein MIP AT5G60660 81.690 4.71e-174 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01642 K09872 - gmx:100818032 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01642 11 17791663 17793361 Gma11g01642 11 17791663 17793361 ECH
Gma11g01642 11 17791663 17793361 Gma12g00670 12 5833323 5835873 ECH
Gma12g00670 12 5833323 5835873 Gma11g01642 11 17791663 17793361 GST
Gma13g02903 13 43629859 43631913 Gma11g01642 11 17791663 17793361 PCT
Gma12g01628 12 36307836 36309077 Gma11g01642 11 17791663 17793361 PCT
Gma11g01642 11 17791663 17793361 Gma13g02903 13 43629859 43631913 PCT
Gma11g01642 11 17791663 17793361 Gma12g01628 12 36307836 36309077 PCT