Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01641 ATGCCGCCGAAGTTCGACCCCTCCCAGATAGTCGACGTCTTCGTCCGCGTTACCGGCGGCGAAGTCGGCGCGGCGAGTTCCCTGGCCCCGAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAGATCGGAGAAGACATCGCCAAAGAAACCGCCAAGGACTGGAAGGGCCTCCGCGTCACCGTCAAGCTCACCGTTCAGAATCGTCAGGCGAAGGTCACGGTGGTCCCCTCCGCCGCCGCCCTCGTTATCAAGGCCCTCAAGGAGCCCGAGCGCGACCGCAAGAAGACCAAGAACATCAAGCACAACGGCAACATCTCGCTCGATGACGTCATCGAGATCGCTAGGGTTATGAGGCCGAGGTCCATGGCCAAGGACCTCAGCGGCTCCATTAAGGAGATTCTCGGAACATGCGTTTCGGTTGGTTGCACCGTTGATGGAAAGGATCCAAAGGACTTGCAGCAGGAGATTTCCGATGGTGATGTTGAGGTCCCTCTCGATTGA 501 0.5928 MPPKFDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIARVMRPRSMAKDLSGSIKEILGTCVSVGCTVDGKDPKDLQQEISDGDVEVPLD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01641 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gma11g01641 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Gma11g01641 166 Gene3D - 82 164 IPR036769 -
Gma11g01641 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Gma11g01641 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gma11g01641 166 Gene3D - 1 81 IPR036796 -
Gma11g01641 166 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 166 - -
Gma11g01641 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Gma11g01641 166 Pfam Ribosomal protein L11, N-terminal domain 15 69 IPR020784 -
Gma11g01641 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gma11g01641 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Gma11g01641 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01641 Gma-Chr11 17779264 17780128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01641 1 164 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.634 3.82e-108 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01641 K02870 - gmx:100527860 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01641 11 17779264 17780128 Gma11g01641 11 17779264 17780128 ECH
Gma11g01641 11 17779264 17780128 Gma12g00671 12 5855970 5857308 ECH
Gma10g00487 10 4834976 4836229 Gma11g01641 11 17779264 17780128 ECH
Gma12g00671 12 5855970 5857308 Gma11g01641 11 17779264 17780128 GST