Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01632 ATGGATCCTGCTCTCAAGCTCTGCGTCTTGTTACTCATTCTTCTCGGATTAGTGAATGGTTCTTTTGCGGAAAATGATTATGGACGCTGCGAAAGCGTTGTTAAGAGTTGGGCGCGTTCTTCGCTCGATGAGGAAATGACAAAAGATGATAAGCACACATTAAGAGATTTGCTGTTTTTTCTGCATGTTCCTAGAACGGGAGGGAGAACCTATTTTCACTGTTTTTTGAAGAAATTGTATCCCAGCTATCTGGAGTGTCCTCGCTCGTATGATAAGTTGCGCTTTGATCCAAGTAAACCAAAATGCAGGCTGTTAGTTACACATGATGACTATAGTATAACGTCCAAACTTCCAAGGGAGAGAACTTCTGTTGTTACCATACTTAGGGATCCAGTTGACCGTGTTTTTAGTACTTATGAATTCTCAATAGAGGTTGCAGCTAGATTTTTGGTGCATCCAAACTTGACGTCCGCAACAAAGATGGCTTTACGCCTAAGCTCTAAGACTAAAGGAGTAAGCACACTGGATATCTGGCCTTGGAAGTATCTGGTTCCATGGATGAGGGAAGACCTATTTGCTAGGAGAGAAGCTAGGTACAGTAGGGGACTGAATATCATTGAAAGCAATGATTCTTATGACATGGAAGATTTTGCAATGCCATTACAAGAATACATCAATGATCCTGTGGCTGTGGATGTTGTACATAATGGAGCCACATTCCAGGTTGCAGGTTTGACAAACAATTCTTATATAGCAGAAGCACATGAAGTGCGCCATTGTGTACAGAAATATAAGACTCTTGGTAAATATGTGCTACAAGTTGCAAAGAAGAGACTGGATGAGATGTTATATGTTGGTCTTACTGAGGAGCACAGAAAATCTGCCACAATGTTTGCAAATGTGGTTGGTGCTCAAGTGATATCACAACTTAATGCACCAAACACTAGCCTGGAAACTACTGATAAGACAGAAAGGAGTTCATTTACGGATAATGATCCCGATAGCAGTGAACATCAGAATAGTACCTTGGACAGAGGAGAAAGTGCGGTTACTTCAAGTGAAGGGGGAGAAGCAACAGAATTTAATATGACTGTTGGAGAACTAATGGATGCTTATGAAGTCTGCATTTCCAATTTACGTAAGGCCCAGTCACGCCGACGCATCTCTTCTTTGAAGAGGATTTCTCCAGTGAACTTTACAAAGGAGGCACGTCTTCAGGTTCCTGAAGAGATTCTCCACAAGATACGGTCTCTTAATGACCTTGACTTACAGCTCTATGAATATGCAAAAGCCATTTTCAATAAACAACATAAAACCTCATTGCTGATTACTGAGGAGAGTTGGGACAACATATCAGGCAGTGCATATGGCCTCTGGAGGGTCGTTACGCTAGCAATTACTTGTGTCTTCTTCATTTTCTTATTCTTACTAATTGTAAATTTTCGAGTTGCGCCATTTTCACCTGTCCTCTCTCTCTCTCTCTCTCTCTGTCACCGTGTTGCAAGTATGAAGGACTGTTGGTTTTTTGACAACAATTTCAATGGTCTGTCGGATGAGAGTCTTGATGATGTGATGGACATGGAGCTTTTGGATTTGCCCCTTGACTTTGAGGATGTGGAAACTGATGCTGTGGAAGAACAAGATTGGGATGCTCAGCTCAAACTCCTTGAAGACCCACCACCACCACTTGGAGTTTTCCCACTACAACAATCCTCTGCATTCTGTGGACAAACTCGGAATGAGAATGCGAAACTCGGCAGCAAGAGTTTCTCTGCTTCTCTAGCGAAGACTGTCAGACCTGCATATGGCAAAACTATTCCTGTCCAGAAAGTCTCTTTAAAAGGAAAAGATTTGCTCCAATTCCAAACCAACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTAGTTCTCCCTCGGTTGAGAACTCCAACTTTGAGTTACCTGTCATCCCAACAAAGCGTCCCCGTACCAAACGCCGGCGTCTCTCAAACATCAGCCTGCTTTACTCTATTCCTTTTATCCTTACTTCACCGGCTTTTCAAAAATTTCAGAGGATGGATTTCTCCAAATCAGATATACAAACACAGCCTTCTGGGGAATTATTATGCAAGTTCAAAAAGAAGCAGAGGAAAAAGGATATTCCCCTGCCGACTAACAAAATTGAGATGAAGAGATCCTCATCACAGGAGTCAGTTGCACCCAGAAAATGCTTGCATTGTGAGGTGACAAAGACGCCGCAATGGAGAGAAGGACCAATGGGTCCTAAGACCCTATGCAATGCCTGTGGGGTTCGATACCGGTCTGGCCGGCTCTTTGCTGAATACCGGCCTGCATCTAGCCCCACTTTTGTAGCATCACTGCACTCAAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCCACCCAGGTGACTGTTAGATAA 2424 0.4295 MDPALKLCVLLLILLGLVNGSFAENDYGRCESVVKSWARSSLDEEMTKDDKHTLRDLLFFLHVPRTGGRTYFHCFLKKLYPSYLECPRSYDKLRFDPSKPKCRLLVTHDDYSITSKLPRERTSVVTILRDPVDRVFSTYEFSIEVAARFLVHPNLTSATKMALRLSSKTKGVSTLDIWPWKYLVPWMREDLFARREARYSRGLNIIESNDSYDMEDFAMPLQEYINDPVAVDVVHNGATFQVAGLTNNSYIAEAHEVRHCVQKYKTLGKYVLQVAKKRLDEMLYVGLTEEHRKSATMFANVVGAQVISQLNAPNTSLETTDKTERSSFTDNDPDSSEHQNSTLDRGESAVTSSEGGEATEFNMTVGELMDAYEVCISNLRKAQSRRRISSLKRISPVNFTKEARLQVPEEILHKIRSLNDLDLQLYEYAKAIFNKQHKTSLLITEESWDNISGSAYGLWRVVTLAITCVFFIFLFLLIVNFRVAPFSPVLSLSLSLCHRVASMKDCWFFDNNFNGLSDESLDDVMDMELLDLPLDFEDVETDAVEEQDWDAQLKLLEDPPPPLGVFPLQQSSAFCGQTRNENAKLGSKSFSASLAKTVRPAYGKTIPVQKVSLKGKDLLQFQTNSPVSVFESSSSSPSVENSNFELPVIPTKRPRTKRRRLSNISLLYSIPFILTSPAFQKFQRMDFSKSDIQTQPSGELLCKFKKKQRKKDIPLPTNKIEMKRSSSQESVAPRKCLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPASSPTFVASLHSNSHKKVLEIRNRATQVTVR 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01632 807 ProSitePatterns GATA-type zinc finger domain. 736 761 IPR000679 GO:0006355|GO:0043565
Gma11g01632 807 PANTHER HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 1 439 IPR010635 GO:0008146|GO:0016021
Gma11g01632 807 Pfam GATA zinc finger 736 769 IPR000679 GO:0006355|GO:0043565
Gma11g01632 807 Gene3D - 53 345 IPR027417 -
Gma11g01632 807 SMART GATA_3 730 780 IPR000679 GO:0006355|GO:0043565
Gma11g01632 807 Gene3D - 731 781 IPR013088 GO:0006355|GO:0008270
Gma11g01632 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 148 IPR027417 -
Gma11g01632 807 MobiDBLite consensus disorder prediction 313 357 - -
Gma11g01632 807 CDD ZnF_GATA 735 782 IPR000679 GO:0006355|GO:0043565
Gma11g01632 807 ProSiteProfiles GATA-type zinc finger domain profile. 730 766 IPR000679 GO:0006355|GO:0043565
Gma11g01632 807 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 732 792 - -
Gma11g01632 807 PANTHER TYROSYLPROTEIN SULFOTRANSFERASE-RELATED 1 439 - -
Gma11g01632 807 MobiDBLite consensus disorder prediction 342 357 - -
Gma11g01632 807 MobiDBLite consensus disorder prediction 323 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01632 Gma-Chr11 17655816 17667496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01632 510 800 C2C2-Gata Transcription Factor Family AT1G08010 37.500 2.54e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma11g01632 GATA 2.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01632 K22218 - gmx:100810026 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01632 11 17655816 17667496 Gma11g01632 11 17655816 17667496 ECH
Gma13g02896 13 43543246 43547161 Gma11g01632 11 17655816 17667496 PCT
Gma12g01642 12 36570898 36575542 Gma11g01632 11 17655816 17667496 PCT
Gma11g01632 11 17655816 17667496 Gma13g02896 13 43543246 43547161 PCT
Gma11g01632 11 17655816 17667496 Gma12g01642 12 36570898 36575542 PCT