LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma11g01632	ATGGATCCTGCTCTCAAGCTCTGCGTCTTGTTACTCATTCTTCTCGGATTAGTGAATGGTTCTTTTGCGGAAAATGATTATGGACGCTGCGAAAGCGTTGTTAAGAGTTGGGCGCGTTCTTCGCTCGATGAGGAAATGACAAAAGATGATAAGCACACATTAAGAGATTTGCTGTTTTTTCTGCATGTTCCTAGAACGGGAGGGAGAACCTATTTTCACTGTTTTTTGAAGAAATTGTATCCCAGCTATCTGGAGTGTCCTCGCTCGTATGATAAGTTGCGCTTTGATCCAAGTAAACCAAAATGCAGGCTGTTAGTTACACATGATGACTATAGTATAACGTCCAAACTTCCAAGGGAGAGAACTTCTGTTGTTACCATACTTAGGGATCCAGTTGACCGTGTTTTTAGTACTTATGAATTCTCAATAGAGGTTGCAGCTAGATTTTTGGTGCATCCAAACTTGACGTCCGCAACAAAGATGGCTTTACGCCTAAGCTCTAAGACTAAAGGAGTAAGCACACTGGATATCTGGCCTTGGAAGTATCTGGTTCCATGGATGAGGGAAGACCTATTTGCTAGGAGAGAAGCTAGGTACAGTAGGGGACTGAATATCATTGAAAGCAATGATTCTTATGACATGGAAGATTTTGCAATGCCATTACAAGAATACATCAATGATCCTGTGGCTGTGGATGTTGTACATAATGGAGCCACATTCCAGGTTGCAGGTTTGACAAACAATTCTTATATAGCAGAAGCACATGAAGTGCGCCATTGTGTACAGAAATATAAGACTCTTGGTAAATATGTGCTACAAGTTGCAAAGAAGAGACTGGATGAGATGTTATATGTTGGTCTTACTGAGGAGCACAGAAAATCTGCCACAATGTTTGCAAATGTGGTTGGTGCTCAAGTGATATCACAACTTAATGCACCAAACACTAGCCTGGAAACTACTGATAAGACAGAAAGGAGTTCATTTACGGATAATGATCCCGATAGCAGTGAACATCAGAATAGTACCTTGGACAGAGGAGAAAGTGCGGTTACTTCAAGTGAAGGGGGAGAAGCAACAGAATTTAATATGACTGTTGGAGAACTAATGGATGCTTATGAAGTCTGCATTTCCAATTTACGTAAGGCCCAGTCACGCCGACGCATCTCTTCTTTGAAGAGGATTTCTCCAGTGAACTTTACAAAGGAGGCACGTCTTCAGGTTCCTGAAGAGATTCTCCACAAGATACGGTCTCTTAATGACCTTGACTTACAGCTCTATGAATATGCAAAAGCCATTTTCAATAAACAACATAAAACCTCATTGCTGATTACTGAGGAGAGTTGGGACAACATATCAGGCAGTGCATATGGCCTCTGGAGGGTCGTTACGCTAGCAATTACTTGTGTCTTCTTCATTTTCTTATTCTTACTAATTGTAAATTTTCGAGTTGCGCCATTTTCACCTGTCCTCTCTCTCTCTCTCTCTCTCTGTCACCGTGTTGCAAGTATGAAGGACTGTTGGTTTTTTGACAACAATTTCAATGGTCTGTCGGATGAGAGTCTTGATGATGTGATGGACATGGAGCTTTTGGATTTGCCCCTTGACTTTGAGGATGTGGAAACTGATGCTGTGGAAGAACAAGATTGGGATGCTCAGCTCAAACTCCTTGAAGACCCACCACCACCACTTGGAGTTTTCCCACTACAACAATCCTCTGCATTCTGTGGACAAACTCGGAATGAGAATGCGAAACTCGGCAGCAAGAGTTTCTCTGCTTCTCTAGCGAAGACTGTCAGACCTGCATATGGCAAAACTATTCCTGTCCAGAAAGTCTCTTTAAAAGGAAAAGATTTGCTCCAATTCCAAACCAACAGCCCAGTTTCTGTTTTTGAAAGCAGTAGTAGTTCTCCCTCGGTTGAGAACTCCAACTTTGAGTTACCTGTCATCCCAACAAAGCGTCCCCGTACCAAACGCCGGCGTCTCTCAAACATCAGCCTGCTTTACTCTATTCCTTTTATCCTTACTTCACCGGCTTTTCAAAAATTTCAGAGGATGGATTTCTCCAAATCAGATATACAAACACAGCCTTCTGGGGAATTATTATGCAAGTTCAAAAAGAAGCAGAGGAAAAAGGATATTCCCCTGCCGACTAACAAAATTGAGATGAAGAGATCCTCATCACAGGAGTCAGTTGCACCCAGAAAATGCTTGCATTGTGAGGTGACAAAGACGCCGCAATGGAGAGAAGGACCAATGGGTCCTAAGACCCTATGCAATGCCTGTGGGGTTCGATACCGGTCTGGCCGGCTCTTTGCTGAATACCGGCCTGCATCTAGCCCCACTTTTGTAGCATCACTGCACTCAAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCCACCCAGGTGACTGTTAGATAA	2424	0.4295	MDPALKLCVLLLILLGLVNGSFAENDYGRCESVVKSWARSSLDEEMTKDDKHTLRDLLFFLHVPRTGGRTYFHCFLKKLYPSYLECPRSYDKLRFDPSKPKCRLLVTHDDYSITSKLPRERTSVVTILRDPVDRVFSTYEFSIEVAARFLVHPNLTSATKMALRLSSKTKGVSTLDIWPWKYLVPWMREDLFARREARYSRGLNIIESNDSYDMEDFAMPLQEYINDPVAVDVVHNGATFQVAGLTNNSYIAEAHEVRHCVQKYKTLGKYVLQVAKKRLDEMLYVGLTEEHRKSATMFANVVGAQVISQLNAPNTSLETTDKTERSSFTDNDPDSSEHQNSTLDRGESAVTSSEGGEATEFNMTVGELMDAYEVCISNLRKAQSRRRISSLKRISPVNFTKEARLQVPEEILHKIRSLNDLDLQLYEYAKAIFNKQHKTSLLITEESWDNISGSAYGLWRVVTLAITCVFFIFLFLLIVNFRVAPFSPVLSLSLSLCHRVASMKDCWFFDNNFNGLSDESLDDVMDMELLDLPLDFEDVETDAVEEQDWDAQLKLLEDPPPPLGVFPLQQSSAFCGQTRNENAKLGSKSFSASLAKTVRPAYGKTIPVQKVSLKGKDLLQFQTNSPVSVFESSSSSPSVENSNFELPVIPTKRPRTKRRRLSNISLLYSIPFILTSPAFQKFQRMDFSKSDIQTQPSGELLCKFKKKQRKKDIPLPTNKIEMKRSSSQESVAPRKCLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPASSPTFVASLHSNSHKKVLEIRNRATQVTVR	807

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma11g01632	807	ProSitePatterns	GATA-type zinc finger domain.	736	761	IPR000679	GO:0006355\|GO:0043565
Gma11g01632	807	PANTHER	HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3	1	439	IPR010635	GO:0008146\|GO:0016021
Gma11g01632	807	Pfam	GATA zinc finger	736	769	IPR000679	GO:0006355\|GO:0043565
Gma11g01632	807	Gene3D	-	53	345	IPR027417	-
Gma11g01632	807	SMART	GATA_3	730	780	IPR000679	GO:0006355\|GO:0043565
Gma11g01632	807	Gene3D	-	731	781	IPR013088	GO:0006355\|GO:0008270
Gma11g01632	807	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	54	148	IPR027417	-
Gma11g01632	807	MobiDBLite	consensus disorder prediction	313	357	-	-
Gma11g01632	807	CDD	ZnF_GATA	735	782	IPR000679	GO:0006355\|GO:0043565
Gma11g01632	807	ProSiteProfiles	GATA-type zinc finger domain profile.	730	766	IPR000679	GO:0006355\|GO:0043565

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma11g01632	Gma-Chr11	17655816	17667496	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma11g01632	510	800	C2C2-Gata Transcription Factor Family	AT1G08010	37.500	2.54e-47	169

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Gma11g01632		GATA	2.1e-15	CL0167

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma11g01632	K22218		-	gmx:100810026	934.48

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma11g01632	11	17655816	17667496	Gma11g01632	11	17655816	17667496	ECH
Gma13g02896	13	43543246	43547161	Gma11g01632	11	17655816	17667496	PCT
Gma12g01642	12	36570898	36575542	Gma11g01632	11	17655816	17667496	PCT
Gma11g01632	11	17655816	17667496	Gma13g02896	13	43543246	43547161	PCT
Gma11g01632	11	17655816	17667496	Gma12g01642	12	36570898	36575542	PCT

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