Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01618 ATGAGCAGCTTAAGGCCCGAATTGCATGTTGCGCAGCAACTTCGGCGCGACAAATTGAGGATCCAAAACAGTTCCCAACAACAACACTTGCAAGAGTTCCCCAACAACCTAGAACAGTTGTCGTTACAACCAGGGTTCAACTTGGATCTTCTTCAAGTAAGAAGCGTTCGAAATGGCAACATGCTTGATGAAGCACTTTATTCATCGGAAATGATCACTTTTCCAAACCCTTTATCTGCTCCTAGAAACCCTTTGGAGTGTCAAGAGCTTATGATGGTTCAGTATGGTTCAACTTCGTTCCCTCATTCATCATCCCCAAAGGAGCAACAATGTGAACCACGCAACTTGGGTGCTAGttggatgctgaattgtaacaacagcagcagcagcaacaacaacaacagcaacaactccCTTTACTCTTCTGAGCTCAATAACAATGTTTCTAGTGAAATGGCCAATAGAGAAATTCAGAAGCAGTTTGGTGAAATGCAATACCCTCCTTCTTCATCTTCTTCGTCTCCAATTTACCATAATGCCTTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAATAATCATCATGGTGAATCTGTGCTTCATTATGGAAACAACGAGTTACGCATTGGGGGTGCTAATTTATGGACACATAATAATAATAATATTCCATTGGGTTTCAAGAAGATTAATAATGATGAACAGTTACATGACAGGAATCATACTCATCAGGGTCTATCATTGTCGCTCTCATCAAATTCACAACAACAACAATCCAAGCCTTGTTTTGATGAAGGGTCTGTTGTGAAATCACCCTCCTCGACCATGAAGCTGAATGCGCTTTCAAACAACAACAACAACACTGTTTATCGAAATGTTGGCCCTCTCGGTCCTTTCACTGGTTACGCCACGATTTTGAAGAGTTCAAGGTTCTTGAGGCCGTGCCAACAGCTGTTAGATGAATGGTGCTGTCAATCTGGTTCAAAATTTGCAAAGAGAGGGATTTGTGATGTTCCAGAGTGGGTCTCTCGAGATGTCAGTTCTGCTTCTACTTGTGCTACTGCTCTTAATGTTGATGAAAGTGCTGCAAAAGGTGGTGGCAATTCGGGTGCTTCATCCtctgtgttgtattgttcaatcgaaaacaacaacaacaacaataataataataataataataataataataataataatagcgctgatggcggagccgcgagtagcttTTGTCTTTCTTCTCGACCAGAGTGCCAAAAGAACAAGGCAAAACTATTGTACATGCAAGAGGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAGATGGTTGTTCAATCATTCGAGTCGGTGGCAGGTCTTAGTTTGGCTACCCCGTACGTCTCCTTGGCTCTCAAGTCAGTGTCAAAACACTTCAGGTGCCTAAAAAATGCAATCTCAGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGACTTTTCAATACCAACCACAAGTACTGGTAGTAAATTTGACAACAACATGGCCAGGCTAAGGTGCATGGACCAAAGTTTTCAAAAAAACAAATCTGGAGGAGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGGGGCTTACCAGAACGCTCAGTGGCAATTCTTAAAGCTTGGCTATTTGAACATTTTCTTCATCCGTACCCCACGGACACTGATAAACACATGTTGGCTACCCAAACGGGTCTATCACGAAACCAGGTATCAAATTGGTTCATAAATGCTCGAGTCCGCGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAAGGCGTGACAACAGAAGCCCGCCAACACCACCAAACCTCTAGTAAAAATGACCAGTTAGCTTCTGCTTCTGAAGGCAGCAACAACCAGCCCAAATCTGATAACCAACCTGCTCACAGGTTCGGTGGCGCCCATGCATCACATTCACATGCAATCCCTGAAAAGCAATTCCAGTGTTTGGAAATGGGGTCATCCTCTTCTGCATGCAACGAGGAACAAATTGGAATGGAAGAAGACCAATGGAATCAAGAGAAGAGGTCAAAACTGGACTGCCAGATTACTACTACAACACCAAGCATGGATGGGACTGTGATGGGGTTTATGCCGTACCGAAGAAGTGGACTTGAGGGTCTTGGATCAGTGTCACTCACTTTGGGTCTTAGGCATGGTGTTGAAGGTGTGCAACAACAACAATTGCAACAAGAGGAGGAGCTTAGGCGTCAATTTGGAGGGCATATGATCTATGACTTTGTGGGCTAG 2307 0.4109 MSSLRPELHVAQQLRRDKLRIQNSSQQQHLQEFPNNLEQLSLQPGFNLDLLQVRSVRNGNMLDEALYSSEMITFPNPLSAPRNPLECQELMMVQYGSTSFPHSSSPKEQQCEPRNLGASWMLNCNNSSSSNNNNSNNSLYSSELNNNVSSEMANREIQKQFGEMQYPPSSSSSSPIYHNALQDMAYGVWGGNNHHGESVLHYGNNELRIGGANLWTHNNNNIPLGFKKINNDEQLHDRNHTHQGLSLSLSSNSQQQQSKPCFDEGSVVKSPSSTMKLNALSNNNNNTVYRNVGPLGPFTGYATILKSSRFLRPCQQLLDEWCCQSGSKFAKRGICDVPEWVSRDVSSASTCATALNVDESAAKGGGNSGASSSVLYCSIENNNNNNNNNNNNNNNNNNSADGGAASSFCLSSRPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSLATPYVSLALKSVSKHFRCLKNAISDQLKLTCEVLGEDFSIPTTSTGSKFDNNMARLRCMDQSFQKNKSGGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGVTTEARQHHQTSSKNDQLASASEGSNNQPKSDNQPAHRFGGAHASHSHAIPEKQFQCLEMGSSSSACNEEQIGMEEDQWNQEKRSKLDCQITTTTPSMDGTVMGFMPYRRSGLEGLGSVSLTLGLRHGVEGVQQQQLQQEEELRRQFGGHMIYDFVG 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01618 768 MobiDBLite consensus disorder prediction 616 645 - -
Gma11g01618 768 Pfam Homeobox KN domain 556 595 IPR008422 GO:0003677|GO:0006355
Gma11g01618 768 SMART prehox3 299 481 IPR006563 -
Gma11g01618 768 ProSiteProfiles 'Homeobox' domain profile. 536 599 IPR001356 GO:0003677
Gma11g01618 768 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 740 - -
Gma11g01618 768 MobiDBLite consensus disorder prediction 612 658 - -
Gma11g01618 768 Pfam Associated with HOX 304 480 IPR006563 -
Gma11g01618 768 Gene3D - 542 604 - -
Gma11g01618 768 CDD homeodomain 539 600 IPR001356 GO:0003677
Gma11g01618 768 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 32 740 - -
Gma11g01618 768 SUPERFAMILY Homeodomain-like 541 605 IPR009057 -
Gma11g01618 768 SMART HOX_1 539 603 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01618 Gma-Chr11 17441872 17447527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01618 380 608 Homeobox Transcription Factor Family AT4G34610 51.092 2.33e-67 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma11g01618 POX 4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01618 - - gmx:100810379 1446.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01618 11 17441872 17447527 Gma11g01618 11 17441872 17447527 ECH
Gma12g00691 12 6123907 6129774 Gma11g01618 11 17441872 17447527 GST
Gma13g02884 13 43408623 43414486 Gma11g01618 11 17441872 17447527 PCT
Gma12g01661 12 36849248 36855129 Gma11g01618 11 17441872 17447527 PCT
Gma11g01618 11 17441872 17447527 Gma13g02884 13 43408623 43414486 PCT
Gma11g01618 11 17441872 17447527 Gma12g01661 12 36849248 36855129 PCT