Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01613 ATGGCTTCTGAGACACCTATCACTCTTAAAGCCATCAACACAAAGCTACCATCTTTGAAAGCAAAGAAGGATCGCCACACCAAGGTGAATGGGAGAGAACGCCGTGTTCTTTTGCCACCTTTATGTGCTGCTCGCGTCTTCCAACTCACTCATGAGTTAGGTTACAAGACTCATGGGGAGACCATAGAATGGCTTCTACGCCAGGCAGAACCTTCCATTATCGCCGCCACTGGCACTGGGATATTACCTTCTTCCATGGTTGTATCTGCATCAACATCAACCCCATCATTGTGTGAGGATGAAAGCACTATTGGTATGCATACAAATCCAATGGTTGTGTCAACAGACAATGAGATCGAGTCAAAAAAGGAATTTCTACCATTGGATCTTGATTCGTTGGCAAACTTTGATGTGGAGTTTTCTGCTAATGAGGTGGCAATCCTGCAATCATTGATCACAAAGTTGGGTTGA 471 0.4459 MASETPITLKAINTKLPSLKAKKDRHTKVNGRERRVLLPPLCAARVFQLTHELGYKTHGETIEWLLRQAEPSIIAATGTGILPSSMVVSASTSTPSLCEDESTIGMHTNPMVVSTDNEIESKKEFLPLDLDSLANFDVEFSANEVAILQSLITKLG 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01613 156 Pfam TCP family transcription factor 21 110 IPR017887 -
Gma11g01613 156 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 153 IPR005333 GO:0003700
Gma11g01613 156 ProSiteProfiles TCP domain profile. 22 76 IPR017887 -
Gma11g01613 156 PANTHER TRANSCRIPTION FACTOR PCF1-LIKE 14 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01613 Gma-Chr11 17401540 17402010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01613 23 95 TCP Transcription Factor Family AT5G08330 70.270 8.11e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gma11g01613 TCP 5.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01613 - K16221 var:108322003 208.764