Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01608 ATGGCAGTGGCAGCGATTTGTGCTTCGGCGGTAGCAGTTCCAGCGATAACATTGAACGATGCGCAATTCGAGAATGCCTCTCTGTACATTGATGATCTTGAGGGGAATGTCAATGAGGAGCAATTGCTTGATCTGTTCGGCCAAACACTGATGATAAGGTTTTATGTTGGGAGGGTTCAAAGAAAAGAAGAAAGAAAGGCAGAGTTGAAAGCCAGATTTGAGCTGGAAATAATAAGAAAATATGAGAAATTACAAGGTGCTAATTTGTACTTGAAAAACCTTGACGATAACGTCAACGATGAAAAACTGAAGGAGCTATTTTCTAAGTTGGGAACAATAACATCTTGCAAGGTGATGCTTGAATCATATAGGCATATCAAAGGCTATACTTTGGTTGTCTTTTCTACTCCTGAGGATGAAAGTAAACCGTTGAATGAAATGAATGGACAAATGATTGGATGA 462 0.3939 MAVAAICASAVAVPAITLNDAQFENASLYIDDLEGNVNEEQLLDLFGQTLMIRFYVGRVQRKEERKAELKARFELEIIRKYEKLQGANLYLKNLDDNVNDEKLKELFSKLGTITSCKVMLESYRHIKGYTLVVFSTPEDESKPLNEMNGQMIG 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01608 153 PANTHER POLYADENYLATE-BINDING PROTEIN 52 153 - -
Gma11g01608 153 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 153 IPR000504 GO:0003723
Gma11g01608 153 SMART rrm1_1 88 153 IPR000504 GO:0003723
Gma11g01608 153 Gene3D - 84 153 IPR012677 -
Gma11g01608 153 PANTHER RNA BINDING PROTEIN 15 49 - -
Gma11g01608 153 PANTHER POLYADENYLATE-BINDING PROTEIN 15 49 - -
Gma11g01608 153 Coils Coil 52 72 - -
Gma11g01608 153 PANTHER RNA BINDING PROTEIN 52 153 - -
Gma11g01608 153 SUPERFAMILY RNA-binding domain, RBD 80 152 IPR035979 GO:0003676
Gma11g01608 153 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 153 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01608 Gma-Chr11 17324454 17325542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01608 54 153 Eukaryotic Initiation Factors Gene Family AT1G71770 57.000 8.93e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01608 K13126 - gmx:100808877 149.828