Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01600 ATGGTGTCCGACGCCAGCAAGAAGAAGGCCGCACAGAAGAAGGCCGCCGCCGCCGCCAAGAGAGGTGGCAAAGCTGCCGCCGCTGCCGTTATGGCCGCCACCTCTTCCAAAGCCGCCGACAAGGTCGCCAACGGAATCGCCGATATTCAGATTTCGGATCGGACCTGCACCGGCGTCCTCTGTTCGCATCCTCTCTCCAGAGATATTCGAATAGAGTCTCTATCCGTCACATTCCATGGACATGATCTCATTGTTGATTCTGAATTGGAGCTGAATTATGGAAGGCGTTATGGCTTACTCGGATTAAATGGTTGTGGAAAATCTACACTGCTTACAGCCATCGGTTGTCGGGAACTTCCAATTCCCGACCACATGGACATATATCATCTAACCAGGGAGATTGATGCCTCTGATATGTCTGCATTGGAAGCTGTCATAAGCTGTGACGAAGAAAGATTGAAATTGGAGAAAGAAGCAGAAGCTTTAGCTGCACAGGATGATGGAGGTGGTGAATCCCTTGAACGCATTTATGAACGATTGGATGCCCTAGATGCAGCCACTGCAGAAAAGCGTGCTGCTGAAATCTTACATGGTCTTGGCTTTGACAAGCAAATGCAGGCAAAGAAGACACGTGATTTTTCCGGTGGCTGGAGAATGAGGATTGCATTAGCGCGAGCTCTATTTATGAACCCAACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAAGTTTGAACGTATTCTGGTTGTGATTTCACACTCTCAGGACTTTCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGCAAAAAACTGAAGCTCTACACTGGTAATTATGATCAATATGTTCAGACACGTTCTGAGCTAGAAGAGAACCAGATGAAACAGTACAAGTGGGAGCAGGAGCAGATTGCCTCAATGAAGGAATACATTGCCCGATTTGGCCATGGTTCGGCTAAACTAGCTCGCCAGGCACAGAGTAAGGAGAAAACACTGGCAAAAATGGAACGTGGTGGACTTGCAGAGAAGGTGGTCAGAGACAAAGTTTTGGTATTTCGTTTTACTGATGTTGGGAAACTTCCCCCTCCAGTTCTCCAGTTTGTTGAGGTGTCATTTGGTTATACTCCTGATAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTAGATTCTCGGGTTGCGCTGGTTGGGCCCAATGGTGCTGGGAAGAGTACACTACTGAAGCTAATGACAGGTGACTTGATGCCTAGTGATGGCATGGTCCGACGTCATAATCATCTTCGAATTGCACAATATCACCAGCATTTGGCCGAAAAGCTAGACATGGAAATGTCTGCTCTCCAGTTTATGATTAAAGAATACCCTGGAAACGAGGAAGAGAAGATGAGGGCGGCGATTGGGAAGTTTGGGCTGTCAGGTAAAGCGCAGGTGATGCCAATGAAGAACTTGTCAGATGGACAGAGGAGCCGAGTGATATTTGCTTGGTTAGCTTGGAGACAGCCTCAGATGCTTCTTTTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCGTTGGCCGAGGCATTGAATGAATGGGACGGTGGCTTGGTGCTTGTCAGCCATGATTTTAGGCTCATAAATCAGGTGGCGCATGAGATATGGGTATGTGCTAATCAATCTGTGACCAGATGGGAGGGTGACATTATGGAATTCAAGGCGCATCTAAAGTCGAAGGCGGGTTTATCTGACTGA 1788 0.4676 MVSDASKKKAAQKKAAAAAKRGGKAAAAAVMAATSSKAADKVANGIADIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIDASDMSALEAVISCDEERLKLEKEAEALAAQDDGGGESLERIYERLDALDAATAEKRAAEILHGLGFDKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVVRDKVLVFRFTDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRVALVGPNGAGKSTLLKLMTGDLMPSDGMVRRHNHLRIAQYHQHLAEKLDMEMSALQFMIKEYPGNEEEKMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAWRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCANQSVTRWEGDIMEFKAHLKSKAGLSD 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01600 595 Gene3D - 69 333 IPR027417 -
Gma11g01600 595 Gene3D - 345 593 IPR027417 -
Gma11g01600 595 Coils Coil 287 307 - -
Gma11g01600 595 CDD ABCF_EF-3 380 571 - -
Gma11g01600 595 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524
Gma11g01600 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Gma11g01600 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 574 IPR027417 -
Gma11g01600 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
Gma11g01600 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 316 IPR027417 -
Gma11g01600 595 Pfam ABC transporter 280 356 IPR032781 -
Gma11g01600 595 SMART AAA_5 93 295 IPR003593 -
Gma11g01600 595 SMART AAA_5 405 593 IPR003593 -
Gma11g01600 595 CDD ABCF_EF-3 69 286 - -
Gma11g01600 595 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 595 - -
Gma11g01600 595 PANTHER - 1 595 - -
Gma11g01600 595 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Gma11g01600 595 Pfam ABC transporter 396 527 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01600 Gma-Chr11 17242263 17246816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01600 380 567 Calmodulin-binding Proteins AT2G36910 25.688 2.28e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01600 K06185 - gmx:100809491 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01600 11 17242263 17246816 Gma11g01600 11 17242263 17246816 ECH
Gma12g00707 12 6282455 6286918 Gma11g01600 11 17242263 17246816 GST
Gma13g02875 13 43290042 43296531 Gma11g01600 11 17242263 17246816 PCT
Gma12g01671 12 37048869 37052189 Gma11g01600 11 17242263 17246816 PCT
Gma11g01600 11 17242263 17246816 Gma13g02875 13 43290042 43296531 PCT
Gma11g01600 11 17242263 17246816 Gma12g01671 12 37048869 37052189 PCT