Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01598 ATGCAGAAAGCAGGGTACGGTGGCGATGGAATATACAGGTCTCTAAGGCCTTGTTTGGTTCTCCCAAATGACCCCAACCTCTCCCTCGTCTCATTCCTCTTCCAAAGCGTTTCCTCTTTCCCATCCAAAATCGCCCTCGTCGATTCCCACTCTTCCCAAACACTTACCTTGGCGCACCTCAAATCACAGGTCGCCAAACTTGCCCACGGTTTCCTCAAACTAGGCATAAACAAAAACGACGTCGTCCTACTGCTCGCTCCCAACAGCATCCACTACCCTATATGCTTCCTCGCTGCCACCGCCATCGGCGCCGTCGTCTCCACCGCCAATCCCATTTACACAGTCAACGAAATCTCGAAGCAAGTCGACGACTCCAACCCCAAACTCCTCATCACCGTCCCAGAATTATGGGACAAAGTCAAGAACCTCAACCTCCCCGCCGTAATTATCGATACGGAAACAGCTCAAGGACTCGTGAGTTTCGAAGCTGGCAACGAGGTGTCGAGAATAACGAGTCTTGACGCGGTGATGGAGATGGCTGGACCGGCGACGGAGCTGCCGGAGAGCGGCGTGAAGCAGGGGGACACGGCGGCGCTTCTGTACTCCTCGGGAACGACGGGGTTGAGCAAGGGCGTGGTTCTGACGCACCGGAACTTCATAGCGGCGTCGGTGATGATCGGAATGGACGACGACCTCGCCGGGGAGCAAGACGACGTGTACCTGTGCGTTCTGCCGATGTTTCACGTGTTCGGGCTGGCGGTGGTGACGTACGCGGCGCTGCGGCGAGGGAGCGCGGTGGTGGTGATGGAGAGGTTCGAGCTGGAGGCGCTGCTGAAGGCTATTGAGAAGCAGAGGGTGACGAAGCTGTGGGTGGTGCCTCCGATCCTGCTTGGTCTGGCGAAACAGAGCGTGGTTGGAAACTACGATCTTTCCTCGTTGAGGCGTATAGGTTCGGGTGCTGCTCCTCTCGGGAAAGACTTGATGGAAGAGTGTGGCAGGCGTTTTCCTCATGTTGCCATTTGTCAGGGTTATGGTATGACAGAAACTTGTGGCATTGTTTCTGTGGAGAATCCAAGAGTAGGGGTTCGTCATACTGGCTCAACGGGAACGCTAGTTTCAGGAGTCGAAGCTCAAATAGTGAGTGTGGATACACAGAAGCCTCTCCCTCCTAGACAGTTGGGAGAGATATGGGTGCGGGGACCTAACATGATGCAAGGCTATCACAACAATCCAGAGGCCACGAGATTGACTATAGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAAGATGGACAACTTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTGCCATATCCTGATGATGAGGCTGGTGAGGTTCCAATTGCCTATGTTGTTCGCTCACCCAATAGTTCACTGACTGAAGAAGAAATTCAGAAGTTTATTGCTAAGCAGGTTGCACCTTTCAAAAAATTGCGAAGGGTAACATTCATCAACAATGTTCCTAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAGCTTACTGCAAAAGCACGATCCAAAATATAA 1647 0.5167 MQKAGYGGDGIYRSLRPCLVLPNDPNLSLVSFLFQSVSSFPSKIALVDSHSSQTLTLAHLKSQVAKLAHGFLKLGINKNDVVLLLAPNSIHYPICFLAATAIGAVVSTANPIYTVNEISKQVDDSNPKLLITVPELWDKVKNLNLPAVIIDTETAQGLVSFEAGNEVSRITSLDAVMEMAGPATELPESGVKQGDTAALLYSSGTTGLSKGVVLTHRNFIAASVMIGMDDDLAGEQDDVYLCVLPMFHVFGLAVVTYAALRRGSAVVVMERFELEALLKAIEKQRVTKLWVVPPILLGLAKQSVVGNYDLSSLRRIGSGAAPLGKDLMEECGRRFPHVAICQGYGMTETCGIVSVENPRVGVRHTGSTGTLVSGVEAQIVSVDTQKPLPPRQLGEIWVRGPNMMQGYHNNPEATRLTIDKKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEILEAVVVPYPDDEAGEVPIAYVVRSPNSSLTEEEIQKFIAKQVAPFKKLRRVTFINNVPKTASGKILRRELTAKARSKI 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01598 548 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Gma11g01598 548 Gene3D - 10 445 IPR042099 -
Gma11g01598 548 CDD 4CL 21 540 - -
Gma11g01598 548 Pfam AMP-binding enzyme 35 450 IPR000873 -
Gma11g01598 548 SUPERFAMILY Acetyl-CoA synthetase-like 20 546 - -
Gma11g01598 548 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 547 - -
Gma11g01598 548 Gene3D - 446 547 IPR045851 -
Gma11g01598 548 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 547 - -
Gma11g01598 548 ProSitePatterns Putative AMP-binding domain signature. 199 210 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01598 Gma-Chr11 17190598 17196841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01598 1 548 Monolignol Biosynthesis Gene Families AT4G05160 69.161 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01598 K01904 - gmx:100808944 1061.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01598 11 17190598 17196841 Gma11g01598 11 17190598 17196841 ECH
Gma12g00709 12 6319940 6323415 Gma11g01598 11 17190598 17196841 GST
Gma13g02874 13 43258162 43263598 Gma11g01598 11 17190598 17196841 PCT
Gma11g01598 11 17190598 17196841 Gma13g02874 13 43258162 43263598 PCT