Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01595 atgggaagagctccatgttgtgacaaggcaagtgttaagagagggCCATGGTCACCAGAAGAAGACACAAAGCTGAAGGAGTACATAGAGAAGCATGGAACTGGAGGGAACTGGATTGCTCTTCCTCAGAAAGCTGGACTTAAGAGATGTGGAAAAAGTTGTAGATTGAGATGGCTCAACTATCTCAGGCCTAACATTAAGCATGGAGATTTCTCAGATGAGGAAGACAGAATAATTTGCAGCCTTTATGTGAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGAAGGACAGACAATGATATCAAGAACTACTGGAACACAAAGTTGAAGAAAAAACTCATGGGTTTGCTTCCTCTTTCTCATCACAGAAAACAACCTTCATTTCCATCCTCTTTTACCCTTCAAAACCCTCCACTCTCTCCTTCAGCTCACCAACTGTACGGAGAGTACTGCACCTACACCCCAACAACAACCACATCTTTCACAAGTAATATTGAACCACCCTTTTCCCTTCCTTCAAGTAACTATGCAAGCACAAGTGACATAACTACCTCAGTTTCTCACCCCTTTTACCAAAACCAAGACTCCATGCAATGCTATTACCCAATTATGAGAGACAACAGCAGCAACAACAACAACAACATGCTTATGTTTGGAAGCGAAGGAAGTTGCAGTACTTCCTCTGATGGAAGCTGCACTAATCAAGGCAGAGAAATTATCAAGCAAGAAGAAAGAATTGGCTGCCACAGCTACAACAATAATAATGATAACTTTATGCTTAGTCACAGCAACAACATTAATGATGGAGAAAAGTCATGTGCTGCTGGTGAGTGGTTTAGCCAAACACTACTAGCACCGTTGGGTTATGATATTGAGGATATTAAGCAATTGATTAGTAGCAGCAGTAGCACTACTATCTTCAATAATGTTGATGAAAACAAGACAGAAGAGAAGGCCATGTACTACTACTACTACTAG 990 0.3909 MGRAPCCDKASVKRGPWSPEEDTKLKEYIEKHGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGDFSDEEDRIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLSHHRKQPSFPSSFTLQNPPLSPSAHQLYGEYCTYTPTTTTSFTSNIEPPFSLPSSNYASTSDITTSVSHPFYQNQDSMQCYYPIMRDNSSNNNNNMLMFGSEGSCSTSSDGSCTNQGREIIKQEERIGCHSYNNNNDNFMLSHSNNINDGEKSCAAGEWFSQTLLAPLGYDIEDIKQLISSSSSTTIFNNVDENKTEEKAMYYYYY 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01595 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma11g01595 329 SMART sant 67 115 IPR001005 -
Gma11g01595 329 SMART sant 13 64 IPR001005 -
Gma11g01595 329 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gma11g01595 329 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gma11g01595 329 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Gma11g01595 329 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gma11g01595 329 Gene3D - 7 68 - -
Gma11g01595 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Gma11g01595 329 PANTHER TRANSCRIPTION FACTOR RAX3 1 311 - -
Gma11g01595 329 CDD SANT 16 62 IPR001005 -
Gma11g01595 329 PANTHER OS09G0431300 PROTEIN 1 311 - -
Gma11g01595 329 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma11g01595 329 Gene3D - 70 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01595 Gma-Chr11 17169545 17171154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01595 1 119 MYB Transcription Factor Family AT5G57620 89.076 2.15e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma11g01595 Myb_DNA-binding 4.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01595 K09422 - gmx:100779186 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01595 11 17169545 17171154 Gma11g01595 11 17169545 17171154 ECH
Gma12g00711 12 6338281 6340505 Gma11g01595 11 17169545 17171154 GST
Gma13g02873 13 43249299 43250920 Gma11g01595 11 17169545 17171154 PCT
Gma12g01674 12 37115036 37116892 Gma11g01595 11 17169545 17171154 PCT
Gma11g01595 11 17169545 17171154 Gma13g02873 13 43249299 43250920 PCT
Gma11g01595 11 17169545 17171154 Gma12g01674 12 37115036 37116892 PCT