Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01584 ATGATAGTTCCCGCCATTTGTATCATCTTTCCCGGCAATTGCTCATTTTCGCATTGCTTCCCTCCTCCCTTCTGTCGCTCTCTCTTCTCTTCCCCTCTTTCTCTCTCTCTCCGCACCATGTCCAAGCCTCCCTCCGCCTTCGACGCCCTCATGTCCGGCGCACGCGCCGCCGCCAAGAAAAAATCCCAATCCCAACCATCCCCCAAGAAACGCAAAACTCCACCCTCTCAAAACCCTAGCAACCTCAAAACCCTTACaccgcaagaacccgccgttaaaccggaagaacacaccgttaaGCCCGAACCGCTGAATGCCCCTCCCGTGCCATCTTCTTCGAAGGAGAAGACTGCGGAGCTGAAGAAGCAAGTTCCCCAGCTGAAGAAGAAACCCTCAGATTTCGATCCTGCTTCGATAACCGCATGGGAGAAAGGCCAGCCTGTGCCGTTTCTATTTCTCTGCTTGGTCTTCGACATCATTTCTCAAGAATCCAAAAGAATTGTAATCACTGACATTGTTTGCAATCTTCTGAGGACTGTTATGCACTGCACGCCGGAAGATCTCGTCAAGGTCGTTTACCTCTCTGCAAACCGGATCGCGCCCGCCCACGAAGGGGTGGAATTGGGAATTGGCGAGGCTTCCATCACCAAGGCGCTTGCTGAGGCGTATGGAACAAATGAGGCCTGGAttaagactcagtatcagAAAAAAGGGGATTTGGGCTTGGTTGCTAAAGAGAGCCGTTCTTCGCAGCCCATGATTATGATGTTTAAGCCTGAAGTATTGACTATTAGGAAGGTTTTCAACACTTTTCGCCTTATTGCTAAGGAATATGGGAAAGAAAGTCAAGAGAAGAAAAAGAATCATATGAAGGCACTTCTTGTTTCTGCAACTGACTGTGAACCTCAATATCTAATCCGTTTGCTACAGTCAAAGTTGCGAATTGGCTATGCTGAGAAAACTCTCTTAGCTGCATTAGGTCAAGCTGCAGTATACACTGAAGAACACTCTAAACCGCCTCCTGATATTCAGTCTCCTTTAGAAGAGGCTTCGAACATTGTTAAACAAGTCTATTCTGTTCTTCCTGACTATGACAAAATAATATCTGCACTGCTTACGGAGGGTCTTTGGATGCTTCCAAAGAAATGTAATTTTACTCCTGGTGTTCCAATTGGACCTATGCTGTCAAAGGCAACAAAGGGTGTATCTGAAATTCTAAATAAATTCCAGGATGTGGAGTTTACCTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACCTGGAGAATGGCTCAGTTGAGATTTACAGTAGACATGCAGAACGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCTGTTTCAAGGTTAAAGAAACCAACTGTATCATCATTAATTCTTGATTGTGAAATTGTTGCATATGATCGTCAAACACAGACGATCCATTCTTTCCAGGCGCTTAGTACTCGGGCTCGCAAGAATGTAGAAATGGAAGATATAAAGGTTGATGTTTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGCCAAGCACTTCTTCAGGAAAACCTGAGAGTCCGTAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAGCCTGGATTTCTTCAGTTTGCAACAACGATAACATCAAATGATGTTGAGGAAATACAGAAGTTTCTTGACCAAGCTGTTGGTGCAAGTTGTGAGGGGTTAATTATTAAAACATTAAATGAGGATGCTACATATGAACCTTTGAAGCGATCACTCAACTGGCTAAAACTGAAGAAAGATTATATGGACAATATAGGGGACTCACTAGATTTGGTACCTATTGCTGCTTTCCATGGTCGTGGGAAACGTACAGGAGTTTATGGTGCCTTCCTCCTTGCTTGCTATGACAGTGACAACGAAGAATTTCAAAGTATTTGCAAGATAGGAACGGGATTCTCTGAAGCAGTGCTTGAAGAACGTTCTTCTAGTCTTCGTTCTAAAGTGATTCCCAAGCCAAAGGCATACTATAGATTTGGAGAATCAATCAATCCTGATGTCTGGTTTGAAGCCAGTGAGGGCATATCTCTTCGATTTCCACGACTACTTCGAGTCAGGCCTGACAAATCTCCCGAACAGGCCTCATCATCTGAGCAGGTTGCTGAAATGTATAACGCTCAAAAACAAAATCACACGATCAACCAAAATGACGATGAAGATGATGATTGA 2223 0.4291 MIVPAICIIFPGNCSFSHCFPPPFCRSLFSSPLSLSLRTMSKPPSAFDALMSGARAAAKKKSQSQPSPKKRKTPPSQNPSNLKTLTPQEPAVKPEEHTVKPEPLNAPPVPSSSKEKTAELKKQVPQLKKKPSDFDPASITAWEKGQPVPFLFLCLVFDIISQESKRIVITDIVCNLLRTVMHCTPEDLVKVVYLSANRIAPAHEGVELGIGEASITKALAEAYGTNEAWIKTQYQKKGDLGLVAKESRSSQPMIMMFKPEVLTIRKVFNTFRLIAKEYGKESQEKKKNHMKALLVSATDCEPQYLIRLLQSKLRIGYAEKTLLAALGQAAVYTEEHSKPPPDIQSPLEEASNIVKQVYSVLPDYDKIISALLTEGLWMLPKKCNFTPGVPIGPMLSKATKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRHAERNTGKFPDVVAAVSRLKKPTVSSLILDCEIVAYDRQTQTIHSFQALSTRARKNVEMEDIKVDVCIFAFDLLYLNGQALLQENLRVRREHLYASFEEEPGFLQFATTITSNDVEEIQKFLDQAVGASCEGLIIKTLNEDATYEPLKRSLNWLKLKKDYMDNIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSDNEEFQSICKIGTGFSEAVLEERSSSLRSKVIPKPKAYYRFGESINPDVWFEASEGISLRFPRLLRVRPDKSPEQASSSEQVAEMYNAQKQNHTINQNDDEDDD 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01584 740 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 60 739 - -
Gma11g01584 740 MobiDBLite consensus disorder prediction 54 133 - -
Gma11g01584 740 CDD OBF_DNA_ligase_I 605 724 - -
Gma11g01584 740 Pfam ATP dependent DNA ligase C terminal region 622 707 IPR012309 GO:0003910|GO:0006281|GO:0006310
Gma11g01584 740 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 207 683 IPR000977 GO:0003910|GO:0005524|GO:0071897
Gma11g01584 740 SUPERFAMILY Nucleic acid-binding proteins 605 725 IPR012340 -
Gma11g01584 740 Pfam ATP dependent DNA ligase domain 393 597 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gma11g01584 740 PANTHER DNA LIGASE 1 60 739 - -
Gma11g01584 740 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 131 384 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma11g01584 740 MobiDBLite consensus disorder prediction 115 129 - -
Gma11g01584 740 Gene3D - 690 726 IPR012340 -
Gma11g01584 740 Gene3D - 606 689 IPR012340 -
Gma11g01584 740 Pfam DNA ligase N terminus 149 326 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma11g01584 740 ProSiteProfiles ATP-dependent DNA ligase family profile. 499 635 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Gma11g01584 740 CDD Adenylation_DNA_ligase_I_Euk 382 600 - -
Gma11g01584 740 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 417 425 IPR016059 GO:0003909
Gma11g01584 740 Gene3D - 125 395 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Gma11g01584 740 MobiDBLite consensus disorder prediction 58 87 - -
Gma11g01584 740 Gene3D - 403 602 - -
Gma11g01584 740 MobiDBLite consensus disorder prediction 705 740 - -
Gma11g01584 740 ProSitePatterns ATP-dependent DNA ligase signature 2. 571 597 IPR016059 GO:0003909
Gma11g01584 740 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 385 603 - -
Gma11g01584 740 MobiDBLite consensus disorder prediction 708 730 - -
Gma11g01584 740 Gene3D DNA ligase/mRNA capping enzyme 422 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01584 Gma-Chr11 17025197 17034742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01584 24 739 Core DNA Replication Machinery Family AT1G08130 64.042 0.0 976
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01584 K10747 - gmx:100803989 1375.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01584 11 17025197 17034742 Gma11g01584 11 17025197 17034742 ECH
Gma12g00721 12 6465816 6473363 Gma11g01584 11 17025197 17034742 GST