Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01582 ATGAAAACCACCGCAGAGGTTGTTTCATCTCATTGTCTTGTTGTAGCAGAGTGCTCTCAATCCAGCCCCACACAACTTTCTGCTATGGAACCTCAGATTCTGAATTTGGGGTGCATGCATTACAGAAGGAGATGCAAGATCAGAGCGCCGTGCTGTGATGAGGTTTTTGACTGTAGGCATTGCCATAATGAAGCTAAGAATTCTGAGGAGGTTGATGCTGTGGATCGTCATGATGTTCCACGCCATGAAATTAAGAAGGTTATCTGCTCCTTATGTGATGTAGAGCAAGATGTTCAGCAGTACTGTATAAACTGTGGAATATGCATGGGCAAGTACTTTTGTACTATATGCAAATTCTTTGATGATGATATTTCAAAGAATCAATACCACTGCGATGAATGTGGCATTTGCAGAACTGGAGGCAAGGATAATTTTTTCCACTGCAACCGATGTGGATGTTGCTACTCAAAGGTAATGGAAAAGGGGCACCGTTGTGTAGAAGGAGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTATCTTTTTGATACAGTAAGAGAAATCAGTGTCTTACCTTGCGCGCATACTATACATTTAGACTGTGTAAAGGAAATGGAAAAACATCAGAGGTACTCATGTCCCGTTTGCTCAAAATCCATCTGTGACATGTCAAGTGTGTGGGAGAAGCTTGACGAATTGATTGCCTCAACTCCAATGCCTGAAACCTACAAAAACAAGATGGTGTGGATACTTTGCAATGATTGTGGAGTAAACTCTCATGTACAATTCCATATTGTGGCCCATAAGTGCTTAAGTTGCAACTCATACAACACAAGACAGATACAAGGAGTACCTGCCACATCAAGCTCTTCTAGGGTAACTGAAATGGTGAGATGA 897 0.4181 MKTTAEVVSSHCLVVAECSQSSPTQLSAMEPQILNLGCMHYRRRCKIRAPCCDEVFDCRHCHNEAKNSEEVDAVDRHDVPRHEIKKVICSLCDVEQDVQQYCINCGICMGKYFCTICKFFDDDISKNQYHCDECGICRTGGKDNFFHCNRCGCCYSKVMEKGHRCVEGAMHHNCPVCFEYLFDTVREISVLPCAHTIHLDCVKEMEKHQRYSCPVCSKSICDMSSVWEKLDELIASTPMPETYKNKMVWILCNDCGVNSHVQFHIVAHKCLSCNSYNTRQIQGVPATSSSSRVTEMVR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01582 298 Gene3D - 245 286 - -
Gma11g01582 298 Pfam CHY zinc finger 38 119 IPR008913 GO:0008270
Gma11g01582 298 Pfam Zinc-ribbon 221 279 IPR039512 -
Gma11g01582 298 SMART ring_2 174 216 IPR001841 -
Gma11g01582 298 SUPERFAMILY Zinc hairpin stack 110 167 IPR037275 -
Gma11g01582 298 SUPERFAMILY RING/U-box 172 222 - -
Gma11g01582 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 236 IPR013083 -
Gma11g01582 298 SUPERFAMILY CHY zinc finger-like 35 108 IPR037274 GO:0008270
Gma11g01582 298 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 296 - -
Gma11g01582 298 ProSiteProfiles Zinc finger CTCHY-type profile. 109 173 IPR017921 -
Gma11g01582 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 23 296 - -
Gma11g01582 298 ProSiteProfiles Zinc finger CHY-type profile. 31 107 IPR008913 GO:0008270
Gma11g01582 298 ProSiteProfiles Zinc finger RING-type profile. 174 217 IPR001841 -
Gma11g01582 298 Pfam RING-type zinc-finger 174 214 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01582 Gma-Chr11 16999756 17003467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01582 27 291 C2H2 Transcription Factor Family AT3G18290 40.146 1.91e-55 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01582 K10144 - gmx:100812709 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01582 11 16999756 17003467 Gma11g01582 11 16999756 17003467 ECH