Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01581 ATGGACACAATGGATTTTCAACAAGAGACTCTCGTGCACATTAATGACTTTGTTGAAGATCCCAACTTAGATCAGTTCATCAATTTGATTCGTTGGGAGCATAAAGATGCTATCTGTAACTTCAATTCTGAGCTTATCAATGAAGCATTCATTGATAACTCATTCCTGTCACACCCTGCAATCCCATTTGATCAGTGCAATGGTAATTCTGTGAATGTTTATGATCCAATTagctctacacatagctccttctcttgttttgatggggaagccaaggaagaagaaggaggaggagaagaagaagataacATGGGGGATACTTCTGCTGCTACAACAACAAGAACTAAAAGTCTTAATAATAAGCCAATACCAAAAACTGATAGGTCCAAGACTTTGGCTTCTGAGAGGAGGAGAAGAGAACGAATGAAGGAGAAGCTTTATACATTGCGGTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCTTCTATCATTGGAGATGCTGTTTCATATATGCATGAACTTCAAGCACAAGCCAGCATGCTGAAGGCTGAGGTTGAAGGACTTGAAACATCCTCATTGAACTCCAAAAATTACCAAGGATTGATTGAAAACCCCATGAGGGTTCAATTGATCACCAACAAGAAGATAATCCAGATGGACATGTTTCAAGTGGATGAAAAAGGGTTTCATGTGAAAATAATGTGCAATAAAGGAGAAGGTGTGGCTGCCTCATTGTACAAGTCTCTCGAGTCTCTGACAGGCTTCAATGTTCAGAATTCAAACTTGACCACAATTTCTGATCGCAGTTTTCTACTTACATTTTCATTGAATGCGAAAGGCCCTGAGCCAGAAATTAACCTGCCCAACTTGAAGTTATGGGTGACTGAAGCTTTTGTGAAACAAGGCTTTGAATTCATACCTTTTTTTTATGCTTGA 939 0.3568 MDTMDFQQETLVHINDFVEDPNLDQFINLIRWEHKDAICNFNSELINEAFIDNSFLSHPAIPFDQCNGNSVNVYDPISSTHSSFSCFDGEAKEEEGGGEEEDNMGDTSAATTTRTKSLNNKPIPKTDRSKTLASERRRRERMKEKLYTLRSLVPNITKMDKASIIGDAVSYMHELQAQASMLKAEVEGLETSSLNSKNYQGLIENPMRVQLITNKKIIQMDMFQVDEKGFHVKIMCNKGEGVAASLYKSLESLTGFNVQNSNLTTISDRSFLLTFSLNAKGPEPEINLPNLKLWVTEAFVKQGFEFIPFFYA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01581 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 191 IPR036638 GO:0046983
Gma11g01581 312 MobiDBLite consensus disorder prediction 85 140 - -
Gma11g01581 312 SMART finulus 132 181 IPR011598 GO:0046983
Gma11g01581 312 Coils Coil 172 192 - -
Gma11g01581 312 Pfam Helix-loop-helix DNA-binding domain 132 176 IPR011598 GO:0046983
Gma11g01581 312 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 308 - -
Gma11g01581 312 MobiDBLite consensus disorder prediction 105 127 - -
Gma11g01581 312 Gene3D - 118 192 IPR036638 GO:0046983
Gma11g01581 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Gma11g01581 312 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01581 Gma-Chr11 16992899 16994526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01581 4 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 48.598 4.55e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma11g01581 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01581 - - gmx:100778649 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01581 11 16992899 16994526 Gma11g01581 11 16992899 16994526 ECH
Gma12g00724 12 6506020 6507343 Gma11g01581 11 16992899 16994526 GST
Gma13g02865 13 43159600 43160999 Gma11g01581 11 16992899 16994526 PCT
Gma12g01683 12 37273700 37275073 Gma11g01581 11 16992899 16994526 PCT
Gma11g01581 11 16992899 16994526 Gma13g02865 13 43159600 43160999 PCT
Gma11g01581 11 16992899 16994526 Gma12g01683 12 37273700 37275073 PCT